miRNA display CGI


Results 81 - 100 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 3' -66.9 NC_003521.1 + 43852 0.67 0.471049
Target:  5'- cCCGUcacaggcGCCCCGGcCGGCUCC-C-GGGCc -3'
miRNA:   3'- cGGCA-------CGGGGUC-GCCGGGGcGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 91656 0.67 0.471897
Target:  5'- cGgCGUGCCCgCGGCucccuGGCgcauUCCGCAgcGGGCu -3'
miRNA:   3'- -CgGCACGGG-GUCG-----CCG----GGGCGU--CCCG- -5'
14286 3' -66.9 NC_003521.1 + 240554 0.67 0.48041
Target:  5'- uCCG-GCCUCcgcuGCgGGUCCCGgGGGGUg -3'
miRNA:   3'- cGGCaCGGGGu---CG-CCGGGGCgUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 88663 0.67 0.471897
Target:  5'- gGCCGccagGUCggugggCCGGCGGCCCgGCucGGGGa -3'
miRNA:   3'- -CGGCa---CGG------GGUCGCCGGGgCG--UCCCg -5'
14286 3' -66.9 NC_003521.1 + 5 0.67 0.48041
Target:  5'- uCCG-GCCUCcgcuGCgGGUCCCGgGGGGUg -3'
miRNA:   3'- cGGCaCGGGGu---CG-CCGGGGCgUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 64746 0.67 0.48041
Target:  5'- cGCCGUgGCCaagacgCCGGcCGGCgCgGCAccGGGCg -3'
miRNA:   3'- -CGGCA-CGG------GGUC-GCCGgGgCGU--CCCG- -5'
14286 3' -66.9 NC_003521.1 + 142647 0.67 0.48041
Target:  5'- aCCGcgGCCUCAGCGGUCggCGCAGcGCc -3'
miRNA:   3'- cGGCa-CGGGGUCGCCGGg-GCGUCcCG- -5'
14286 3' -66.9 NC_003521.1 + 223335 0.67 0.48041
Target:  5'- uGCCGcagauaggUGCCCCA--GGCCUCGgCGGcGGCc -3'
miRNA:   3'- -CGGC--------ACGGGGUcgCCGGGGC-GUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 89010 0.67 0.488998
Target:  5'- uGCCGcggGCCCCAcCGGCgCCaCGGcGGUg -3'
miRNA:   3'- -CGGCa--CGGGGUcGCCGgGGcGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 202609 0.67 0.509892
Target:  5'- gGCCGcccugcgccuccUGCCCgaccucgaccgcgagCacugggAGCGGCCCCGCuGGGa -3'
miRNA:   3'- -CGGC------------ACGGG---------------G------UCGCCGGGGCGuCCCg -5'
14286 3' -66.9 NC_003521.1 + 2382 0.67 0.509892
Target:  5'- gGCCGcccugcgccuccUGCCCgaccucgaccgcgagCacugggAGCGGCCCCGCuGGGa -3'
miRNA:   3'- -CGGC------------ACGGG---------------G------UCGCCGGGGCGuCCCg -5'
14286 3' -66.9 NC_003521.1 + 184793 0.67 0.506383
Target:  5'- cGCCuGgacGCCCUGGUGGCCgccuccgaCUGguGGGUg -3'
miRNA:   3'- -CGG-Ca--CGGGGUCGCCGG--------GGCguCCCG- -5'
14286 3' -66.9 NC_003521.1 + 127730 0.67 0.509892
Target:  5'- aGCCGcuccUGCaCCCGGCGGCCguCUGCgccucguagcccggaAGGuGCu -3'
miRNA:   3'- -CGGC----ACG-GGGUCGCCGG--GGCG---------------UCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 92041 0.67 0.506383
Target:  5'- aGCCGcgGCUCCu-CGGCgcgaCCGCcgAGGGCa -3'
miRNA:   3'- -CGGCa-CGGGGucGCCGg---GGCG--UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 54205 0.67 0.506383
Target:  5'- aCCGcUGCUggCCGGUGGUCCgGCAguaccgacugccGGGCg -3'
miRNA:   3'- cGGC-ACGG--GGUCGCCGGGgCGU------------CCCG- -5'
14286 3' -66.9 NC_003521.1 + 71281 0.67 0.506383
Target:  5'- gGCgGggGCCgCGGCacgGGCCCC-UGGGGCa -3'
miRNA:   3'- -CGgCa-CGGgGUCG---CCGGGGcGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 55608 0.67 0.505508
Target:  5'- cGUCGUacacgcaGUCCCGcGCGGCCCacacCG-AGGGCg -3'
miRNA:   3'- -CGGCA-------CGGGGU-CGCCGGG----GCgUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 115909 0.67 0.506383
Target:  5'- aCCGUGCUgaaCAcgGGCCCCGUgcugugggagaAGGGCg -3'
miRNA:   3'- cGGCACGGg--GUcgCCGGGGCG-----------UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 129618 0.67 0.497656
Target:  5'- aGUCGaGUCgCCGGCcGCCCgGCGGGuGCu -3'
miRNA:   3'- -CGGCaCGG-GGUCGcCGGGgCGUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 207048 0.67 0.488998
Target:  5'- gGCUGgGCCgCAGgccggaGGCgUUGCAGGGCa -3'
miRNA:   3'- -CGGCaCGGgGUCg-----CCGgGGCGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.