miRNA display CGI


Results 41 - 60 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 3' -66.9 NC_003521.1 + 120926 0.72 0.232706
Target:  5'- uGCgGcUGCCCgcggCGGCGGCUCCGgcgaGGGGCa -3'
miRNA:   3'- -CGgC-ACGGG----GUCGCCGGGGCg---UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 91936 0.72 0.232706
Target:  5'- uGCgGUGgaCCCGGCGGCggacCCCGUGGcGGCg -3'
miRNA:   3'- -CGgCACg-GGGUCGCCG----GGGCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 186523 0.71 0.276078
Target:  5'- gGCgGUGUCgCCAGCgggGGCUCCgugggagGCAGGGCc -3'
miRNA:   3'- -CGgCACGG-GGUCG---CCGGGG-------CGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 42792 0.71 0.276078
Target:  5'- cCCGUGCagCCCGGCGGCUgcacgcgCCGCAacGGCa -3'
miRNA:   3'- cGGCACG--GGGUCGCCGG-------GGCGUc-CCG- -5'
14286 3' -66.9 NC_003521.1 + 153079 0.71 0.276078
Target:  5'- cGCCGggGCCCgGGCcggGGCCcaccacgCCGCcGGGCg -3'
miRNA:   3'- -CGGCa-CGGGgUCG---CCGG-------GGCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 65715 0.71 0.276666
Target:  5'- aGCgGcGCCgCGGCGGCCCUGgccggcaaaaAGGGCa -3'
miRNA:   3'- -CGgCaCGGgGUCGCCGGGGCg---------UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 165878 0.71 0.288645
Target:  5'- uGCaCGUGCUCgGGCGGCggguacaccacCCCGCGcugccGGGCc -3'
miRNA:   3'- -CG-GCACGGGgUCGCCG-----------GGGCGU-----CCCG- -5'
14286 3' -66.9 NC_003521.1 + 45624 0.71 0.288645
Target:  5'- cGCCGacgcagacgGCCaCCGccGcCGGCUCCGCGGGGUc -3'
miRNA:   3'- -CGGCa--------CGG-GGU--C-GCCGGGGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 88527 0.71 0.294785
Target:  5'- aGCCGUGCaggcgcaCCGaaaCGGCCUCcucgggGCAGGGCa -3'
miRNA:   3'- -CGGCACGg------GGUc--GCCGGGG------CGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 136658 0.71 0.294785
Target:  5'- cGCCGUGCgaCCCGcGCcGCCgCCGCAGaGCa -3'
miRNA:   3'- -CGGCACG--GGGU-CGcCGG-GGCGUCcCG- -5'
14286 3' -66.9 NC_003521.1 + 118924 0.71 0.288645
Target:  5'- cGCCGcgGCgUgGGCGGCggcguCCCGuCAGGGCc -3'
miRNA:   3'- -CGGCa-CGgGgUCGCCG-----GGGC-GUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 223333 0.71 0.270827
Target:  5'- cGCCGUGa-CCGGCGGCgCCGCuaccGGuGCc -3'
miRNA:   3'- -CGGCACggGGUCGCCGgGGCGu---CC-CG- -5'
14286 3' -66.9 NC_003521.1 + 72983 0.71 0.288645
Target:  5'- aGCCGacgaGCCCgCGGCGGUcgugCCCGgGGGGg -3'
miRNA:   3'- -CGGCa---CGGG-GUCGCCG----GGGCgUCCCg -5'
14286 3' -66.9 NC_003521.1 + 103584 0.71 0.276666
Target:  5'- cGCCGUcgGCCCCGGcCGG-UgCGCGGGGg -3'
miRNA:   3'- -CGGCA--CGGGGUC-GCCgGgGCGUCCCg -5'
14286 3' -66.9 NC_003521.1 + 170691 0.71 0.270827
Target:  5'- cGCCGcagcucgagGCCCUgauAGCGGCCCUuCGGcGGCa -3'
miRNA:   3'- -CGGCa--------CGGGG---UCGCCGGGGcGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 120089 0.71 0.276666
Target:  5'- cGCCaccugGUGCCCCuGGUGGCCaCGgucCAGGGCc -3'
miRNA:   3'- -CGG-----CACGGGG-UCGCCGGgGC---GUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 87756 0.71 0.276666
Target:  5'- cCCGgGCCCCGGCGGCggaggaggCCUG-GGGGCc -3'
miRNA:   3'- cGGCaCGGGGUCGCCG--------GGGCgUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 184837 0.71 0.286822
Target:  5'- cGCCGUGgaCCGgcuGCGGCCCCugcacaucggcgugGUGGGGCu -3'
miRNA:   3'- -CGGCACggGGU---CGCCGGGG--------------CGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 74564 0.71 0.282605
Target:  5'- uGCgCGUGCCCguGagcaCGGCCCgcuCGCcGGGCg -3'
miRNA:   3'- -CG-GCACGGGguC----GCCGGG---GCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 226845 0.71 0.288645
Target:  5'- cGCCGccGCgCCgGGCaGGCCCauCAGGGCg -3'
miRNA:   3'- -CGGCa-CG-GGgUCG-CCGGGgcGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.