Results 61 - 80 of 289 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14286 | 3' | -66.9 | NC_003521.1 | + | 186523 | 0.71 | 0.276078 |
Target: 5'- gGCgGUGUCgCCAGCgggGGCUCCgugggagGCAGGGCc -3' miRNA: 3'- -CGgCACGG-GGUCG---CCGGGG-------CGUCCCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 89722 | 0.7 | 0.32701 |
Target: 5'- cGCCaucCCCCAGCGGCCCgaccCGaGGGGUc -3' miRNA: 3'- -CGGcacGGGGUCGCCGGG----GCgUCCCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 164145 | 0.7 | 0.313815 |
Target: 5'- cGCUGUcCCCCAGCGuCCUCGCAGuccGCg -3' miRNA: 3'- -CGGCAcGGGGUCGCcGGGGCGUCc--CG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 209251 | 0.7 | 0.32701 |
Target: 5'- uCCGUGCC--AGCGuGUCCCGCGaccuGGGCu -3' miRNA: 3'- cGGCACGGggUCGC-CGGGGCGU----CCCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 32904 | 0.7 | 0.32768 |
Target: 5'- cGCCGUGCCCgccgcccccggcguaGGUGGCgCCGgagagcccaAGGGCg -3' miRNA: 3'- -CGGCACGGGg--------------UCGCCGgGGCg--------UCCCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 92103 | 0.7 | 0.33376 |
Target: 5'- gGCgGUGCCCCGGguCGGaaCCCC-CGGGuGCg -3' miRNA: 3'- -CGgCACGGGGUC--GCC--GGGGcGUCC-CG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 113056 | 0.7 | 0.33376 |
Target: 5'- cGCCGUGCUCCAGCaccuuccgGGCUacgaggCGCAGacGGCc -3' miRNA: 3'- -CGGCACGGGGUCG--------CCGGg-----GCGUC--CCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 105051 | 0.7 | 0.33376 |
Target: 5'- cCCGUGCgCgAGCaGCCCCa-GGGGCg -3' miRNA: 3'- cGGCACGgGgUCGcCGGGGcgUCCCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 94928 | 0.7 | 0.320361 |
Target: 5'- cGCCGcugcucccGCCgCCGGCGGCCUCGUcgucGGCg -3' miRNA: 3'- -CGGCa-------CGG-GGUCGCCGGGGCGuc--CCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 145576 | 0.7 | 0.347565 |
Target: 5'- -aCGUGCUgCGGCGGCacgaCGCGGcGGCc -3' miRNA: 3'- cgGCACGGgGUCGCCGgg--GCGUC-CCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 70069 | 0.7 | 0.347565 |
Target: 5'- uGUCGgGCCagcacguaCAGCGGgUugCCGCAGGGCa -3' miRNA: 3'- -CGGCaCGGg-------GUCGCCgG--GGCGUCCCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 128351 | 0.7 | 0.320361 |
Target: 5'- uGCCGaaGUa--GGUGGCCCCGCcGGGCg -3' miRNA: 3'- -CGGCa-CGgggUCGCCGGGGCGuCCCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 196976 | 0.7 | 0.340612 |
Target: 5'- gGCCGgggcGCCUguGaCGGgCCCGCGGccGGCg -3' miRNA: 3'- -CGGCa---CGGGguC-GCCgGGGCGUC--CCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 121902 | 0.7 | 0.320361 |
Target: 5'- cGCCGccGCCCaCGccGCGGCgCCGacgAGGGCg -3' miRNA: 3'- -CGGCa-CGGG-GU--CGCCGgGGCg--UCCCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 103480 | 0.7 | 0.323009 |
Target: 5'- gGgCG-GCUCCAGCGGgCCCGCgugauaggugaacucGGGGUc -3' miRNA: 3'- -CgGCaCGGGGUCGCCgGGGCG---------------UCCCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 74738 | 0.7 | 0.32701 |
Target: 5'- uGCCGgcccGCUCCcGCuauGGCCCUGCGGGaGUg -3' miRNA: 3'- -CGGCa---CGGGGuCG---CCGGGGCGUCC-CG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 86218 | 0.7 | 0.338545 |
Target: 5'- gGCgGcgGCaCgCCGGCGGCCUugagcuccuugacgUGCAGGGCg -3' miRNA: 3'- -CGgCa-CG-G-GGUCGCCGGG--------------GCGUCCCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 60877 | 0.7 | 0.338545 |
Target: 5'- uGUgGUGCCgCAGUucucggagaucuucGGCauCCCGCAGGGUc -3' miRNA: 3'- -CGgCACGGgGUCG--------------CCG--GGGCGUCCCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 166474 | 0.7 | 0.33376 |
Target: 5'- gGCCGUaGCCgCgCAGCaGCgCCauccaGCGGGGCg -3' miRNA: 3'- -CGGCA-CGG-G-GUCGcCG-GGg----CGUCCCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 120530 | 0.7 | 0.33376 |
Target: 5'- cCCGgggaaggGCCCUcggcggccGGCGGUCCCGgGGGaGCg -3' miRNA: 3'- cGGCa------CGGGG--------UCGCCGGGGCgUCC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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