miRNA display CGI


Results 21 - 40 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 3' -66.9 NC_003521.1 + 85317 0.73 0.227644
Target:  5'- cGCCGUcGCUCCAgccuuggcccGCGGCCcgCCGCAGGccgGCg -3'
miRNA:   3'- -CGGCA-CGGGGU----------CGCCGG--GGCGUCC---CG- -5'
14286 3' -66.9 NC_003521.1 + 137164 0.73 0.227644
Target:  5'- gGCCGcgGCCgCAGCGGCCgCCGCcGaGCu -3'
miRNA:   3'- -CGGCa-CGGgGUCGCCGG-GGCGuCcCG- -5'
14286 3' -66.9 NC_003521.1 + 88465 0.72 0.232706
Target:  5'- cGCC--GCCCCGGcCGGCCCCagaGCAGcgucGGCg -3'
miRNA:   3'- -CGGcaCGGGGUC-GCCGGGG---CGUC----CCG- -5'
14286 3' -66.9 NC_003521.1 + 120926 0.72 0.232706
Target:  5'- uGCgGcUGCCCgcggCGGCGGCUCCGgcgaGGGGCa -3'
miRNA:   3'- -CGgC-ACGGG----GUCGCCGGGGCg---UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 91936 0.72 0.232706
Target:  5'- uGCgGUGgaCCCGGCGGCggacCCCGUGGcGGCg -3'
miRNA:   3'- -CGgCACg-GGGUCGCCG----GGGCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 67563 0.72 0.232706
Target:  5'- aCUGUGUCaggCGGCgGGCCCCGC-GGGCc -3'
miRNA:   3'- cGGCACGGg--GUCG-CCGGGGCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 223172 0.72 0.237862
Target:  5'- cGUgGUGCCCCGGUGcuggcguacguaGCUCCGCAGcGCg -3'
miRNA:   3'- -CGgCACGGGGUCGC------------CGGGGCGUCcCG- -5'
14286 3' -66.9 NC_003521.1 + 209532 0.72 0.237862
Target:  5'- cGCCGcUGCCgCGGUuauGcGCCCgGCGGGGUg -3'
miRNA:   3'- -CGGC-ACGGgGUCG---C-CGGGgCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 212023 0.72 0.243114
Target:  5'- gGCCGUGUgCCaAGUGGCaugagagggCGCGGGGCg -3'
miRNA:   3'- -CGGCACGgGG-UCGCCGgg-------GCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 90295 0.72 0.243114
Target:  5'- cGCCG-GaCCCCA-CGGCUCCcgcuccuaGCAGGGCc -3'
miRNA:   3'- -CGGCaC-GGGGUcGCCGGGG--------CGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 17424 0.72 0.243114
Target:  5'- cGCCGggGCgCCAcaCGGCCCgCGuCGGGGCg -3'
miRNA:   3'- -CGGCa-CGgGGUc-GCCGGG-GC-GUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 149570 0.72 0.243114
Target:  5'- -gCGUGUCCCGGaCGGgaCCCCG-AGGGCc -3'
miRNA:   3'- cgGCACGGGGUC-GCC--GGGGCgUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 174718 0.72 0.248461
Target:  5'- -aCG-GCCUCcuggauaaagagGGCGGCCCaaCGCAGGGCu -3'
miRNA:   3'- cgGCaCGGGG------------UCGCCGGG--GCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 152162 0.72 0.248461
Target:  5'- cGCCG-GCCCaccgaccuGGCGGCCCucugcgccuCGCuGGGCu -3'
miRNA:   3'- -CGGCaCGGGg-------UCGCCGGG---------GCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 235102 0.72 0.249001
Target:  5'- cGCCGUGCCCgGGCcguacacauaaccccGGugacggcgcccguuCCCCGCGgacGGGCg -3'
miRNA:   3'- -CGGCACGGGgUCG---------------CC--------------GGGGCGU---CCCG- -5'
14286 3' -66.9 NC_003521.1 + 161480 0.72 0.253905
Target:  5'- gGCCGUGUCCUuugcGCGaGaCCCUGguGGGUc -3'
miRNA:   3'- -CGGCACGGGGu---CGC-C-GGGGCguCCCG- -5'
14286 3' -66.9 NC_003521.1 + 224244 0.72 0.253905
Target:  5'- uCCGUccuCCCCGGUcGCCUCGCAGGcGCa -3'
miRNA:   3'- cGGCAc--GGGGUCGcCGGGGCGUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 4582 0.72 0.253905
Target:  5'- cGCCG-GCCuCCGGUuugcuaacgGGCCgCGCGGGGg -3'
miRNA:   3'- -CGGCaCGG-GGUCG---------CCGGgGCGUCCCg -5'
14286 3' -66.9 NC_003521.1 + 55222 0.72 0.257775
Target:  5'- uCCGUcggcguuuaauacaGCCCCgAGCGGCucgccggcgagCCCGCGGGGg -3'
miRNA:   3'- cGGCA--------------CGGGG-UCGCCG-----------GGGCGUCCCg -5'
14286 3' -66.9 NC_003521.1 + 36692 0.72 0.258889
Target:  5'- gGCCGgGCUCCGGCgccuGGCCCgagcagguggaggCGCAGuGGCg -3'
miRNA:   3'- -CGGCaCGGGGUCG----CCGGG-------------GCGUC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.