miRNA display CGI


Results 61 - 80 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 3' -66.9 NC_003521.1 + 128035 0.71 0.301027
Target:  5'- aGCgCGUGCCCguaGGCGGCCa-GCAGG-Ca -3'
miRNA:   3'- -CG-GCACGGGg--UCGCCGGggCGUCCcG- -5'
14286 3' -66.9 NC_003521.1 + 164145 0.7 0.313815
Target:  5'- cGCUGUcCCCCAGCGuCCUCGCAGuccGCg -3'
miRNA:   3'- -CGGCAcGGGGUCGCcGGGGCGUCc--CG- -5'
14286 3' -66.9 NC_003521.1 + 121902 0.7 0.320361
Target:  5'- cGCCGccGCCCaCGccGCGGCgCCGacgAGGGCg -3'
miRNA:   3'- -CGGCa-CGGG-GU--CGCCGgGGCg--UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 128351 0.7 0.320361
Target:  5'- uGCCGaaGUa--GGUGGCCCCGCcGGGCg -3'
miRNA:   3'- -CGGCa-CGgggUCGCCGGGGCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 94928 0.7 0.320361
Target:  5'- cGCCGcugcucccGCCgCCGGCGGCCUCGUcgucGGCg -3'
miRNA:   3'- -CGGCa-------CGG-GGUCGCCGGGGCGuc--CCG- -5'
14286 3' -66.9 NC_003521.1 + 103480 0.7 0.323009
Target:  5'- gGgCG-GCUCCAGCGGgCCCGCgugauaggugaacucGGGGUc -3'
miRNA:   3'- -CgGCaCGGGGUCGCCgGGGCG---------------UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 74738 0.7 0.32701
Target:  5'- uGCCGgcccGCUCCcGCuauGGCCCUGCGGGaGUg -3'
miRNA:   3'- -CGGCa---CGGGGuCG---CCGGGGCGUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 89722 0.7 0.32701
Target:  5'- cGCCaucCCCCAGCGGCCCgaccCGaGGGGUc -3'
miRNA:   3'- -CGGcacGGGGUCGCCGGG----GCgUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 209251 0.7 0.32701
Target:  5'- uCCGUGCC--AGCGuGUCCCGCGaccuGGGCu -3'
miRNA:   3'- cGGCACGGggUCGC-CGGGGCGU----CCCG- -5'
14286 3' -66.9 NC_003521.1 + 32904 0.7 0.32768
Target:  5'- cGCCGUGCCCgccgcccccggcguaGGUGGCgCCGgagagcccaAGGGCg -3'
miRNA:   3'- -CGGCACGGGg--------------UCGCCGgGGCg--------UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 166474 0.7 0.33376
Target:  5'- gGCCGUaGCCgCgCAGCaGCgCCauccaGCGGGGCg -3'
miRNA:   3'- -CGGCA-CGG-G-GUCGcCG-GGg----CGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 120530 0.7 0.33376
Target:  5'- cCCGgggaaggGCCCUcggcggccGGCGGUCCCGgGGGaGCg -3'
miRNA:   3'- cGGCa------CGGGG--------UCGCCGGGGCgUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 105051 0.7 0.33376
Target:  5'- cCCGUGCgCgAGCaGCCCCa-GGGGCg -3'
miRNA:   3'- cGGCACGgGgUCGcCGGGGcgUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 92103 0.7 0.33376
Target:  5'- gGCgGUGCCCCGGguCGGaaCCCC-CGGGuGCg -3'
miRNA:   3'- -CGgCACGGGGUC--GCC--GGGGcGUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 113056 0.7 0.33376
Target:  5'- cGCCGUGCUCCAGCaccuuccgGGCUacgaggCGCAGacGGCc -3'
miRNA:   3'- -CGGCACGGGGUCG--------CCGGg-----GCGUC--CCG- -5'
14286 3' -66.9 NC_003521.1 + 86218 0.7 0.338545
Target:  5'- gGCgGcgGCaCgCCGGCGGCCUugagcuccuugacgUGCAGGGCg -3'
miRNA:   3'- -CGgCa-CG-G-GGUCGCCGGG--------------GCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 60877 0.7 0.338545
Target:  5'- uGUgGUGCCgCAGUucucggagaucuucGGCauCCCGCAGGGUc -3'
miRNA:   3'- -CGgCACGGgGUCG--------------CCG--GGGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 196976 0.7 0.340612
Target:  5'- gGCCGgggcGCCUguGaCGGgCCCGCGGccGGCg -3'
miRNA:   3'- -CGGCa---CGGGguC-GCCgGGGCGUC--CCG- -5'
14286 3' -66.9 NC_003521.1 + 70069 0.7 0.347565
Target:  5'- uGUCGgGCCagcacguaCAGCGGgUugCCGCAGGGCa -3'
miRNA:   3'- -CGGCaCGGg-------GUCGCCgG--GGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 145576 0.7 0.347565
Target:  5'- -aCGUGCUgCGGCGGCacgaCGCGGcGGCc -3'
miRNA:   3'- cgGCACGGgGUCGCCGgg--GCGUC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.