miRNA display CGI


Results 21 - 40 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 3' -66.9 NC_003521.1 + 234110 0.66 0.559974
Target:  5'- gGCCcUGCaccacggcgagaCCCAGCaGCgCUCGCGGGcGCa -3'
miRNA:   3'- -CGGcACG------------GGGUCGcCG-GGGCGUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 186836 0.66 0.559974
Target:  5'- -aCG-GUCCUgcgaauGGCGGCCCaGCGGcGGCg -3'
miRNA:   3'- cgGCaCGGGG------UCGCCGGGgCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 100903 0.66 0.559066
Target:  5'- gGCCGUGCCCCgaggagcAGCGcGCCUCcuaccagaaGCuGGacGCg -3'
miRNA:   3'- -CGGCACGGGG-------UCGC-CGGGG---------CGuCC--CG- -5'
14286 3' -66.9 NC_003521.1 + 20508 0.66 0.557252
Target:  5'- aCCGUGCuggucCCCAucgugugcauguucGUGGCCUauaCGCuGGGCa -3'
miRNA:   3'- cGGCACG-----GGGU--------------CGCCGGG---GCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 83554 0.66 0.554533
Target:  5'- cGCCGuUGCCCCggaaaggcgacgGGUcucuugcucuuggucGGaCCUCGCGGcGGCg -3'
miRNA:   3'- -CGGC-ACGGGG------------UCG---------------CC-GGGGCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 155488 0.66 0.550915
Target:  5'- cGCCG-GCCUgCGGCGGgC-CGC-GGGCc -3'
miRNA:   3'- -CGGCaCGGG-GUCGCCgGgGCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 2611 0.66 0.550915
Target:  5'- cGCCGUGCcgacgCCCAGgcucuUGGCCUCGaCuuGGCu -3'
miRNA:   3'- -CGGCACG-----GGGUC-----GCCGGGGC-GucCCG- -5'
14286 3' -66.9 NC_003521.1 + 148433 0.66 0.550915
Target:  5'- gGCC--GCgCCGGCGGCUCCa-GGGGUg -3'
miRNA:   3'- -CGGcaCGgGGUCGCCGGGGcgUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 209205 0.66 0.550915
Target:  5'- cGUCG-GCCgCGGUGGCCCUGCca-GCu -3'
miRNA:   3'- -CGGCaCGGgGUCGCCGGGGCGuccCG- -5'
14286 3' -66.9 NC_003521.1 + 166262 0.66 0.550915
Target:  5'- gGCCGUGCUCacgggcacgcgcaCGGCgcggcugguccgcguGGCCUCguugcguacggccaGCAGGGCg -3'
miRNA:   3'- -CGGCACGGG-------------GUCG---------------CCGGGG--------------CGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 150510 0.66 0.550915
Target:  5'- cGCCGgcgggGCCCUgcuaggAGCGGgagCCGUGGGGUc -3'
miRNA:   3'- -CGGCa----CGGGG------UCGCCgg-GGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 47859 0.66 0.550012
Target:  5'- cGCCGUGgCCgAGaacaugcugaucaUGGCCCaguguccCAGGGCg -3'
miRNA:   3'- -CGGCACgGGgUC-------------GCCGGGgc-----GUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 223793 0.66 0.550012
Target:  5'- cGCCGUggGCCgCCAGacgaCGGgCCUGCGccgccgccaccgcGGGCg -3'
miRNA:   3'- -CGGCA--CGG-GGUC----GCCgGGGCGU-------------CCCG- -5'
14286 3' -66.9 NC_003521.1 + 76385 0.66 0.550012
Target:  5'- gGCCGcgGCCgCGGUGGCgCUGCuagcaccAGcGGCg -3'
miRNA:   3'- -CGGCa-CGGgGUCGCCGgGGCG-------UC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 207724 0.66 0.545501
Target:  5'- cGCCGUcaucggcuggcuggaGCCCguGCagaaGGCcaucuucauggaCCCGCuGGGCg -3'
miRNA:   3'- -CGGCA---------------CGGGguCG----CCG------------GGGCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 13895 0.66 0.541902
Target:  5'- cGCCGggggGCCCgGcGCGGagggggCCGCGGaGGCc -3'
miRNA:   3'- -CGGCa---CGGGgU-CGCCgg----GGCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 196470 0.66 0.541902
Target:  5'- gGCCGcaGCCCCAGC-GCgUCGCGGaugcGGUg -3'
miRNA:   3'- -CGGCa-CGGGGUCGcCGgGGCGUC----CCG- -5'
14286 3' -66.9 NC_003521.1 + 92388 0.66 0.541902
Target:  5'- uGCCGUcGCUCCGcCGGCUCCuCcGGGUc -3'
miRNA:   3'- -CGGCA-CGGGGUcGCCGGGGcGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 53497 0.66 0.541902
Target:  5'- cGUCGagGCCgCugcuGCGGCgUCGCAGcGGCc -3'
miRNA:   3'- -CGGCa-CGGgGu---CGCCGgGGCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 35490 0.66 0.541902
Target:  5'- uGCCGccGCCgaGGaGGCgCCGUAGGGUg -3'
miRNA:   3'- -CGGCa-CGGggUCgCCGgGGCGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.