Results 41 - 60 of 289 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14286 | 3' | -66.9 | NC_003521.1 | + | 135220 | 0.66 | 0.541902 |
Target: 5'- uGCUGcagcGCCUgAGCGGCUgCGcCGGcGGCg -3' miRNA: 3'- -CGGCa---CGGGgUCGCCGGgGC-GUC-CCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 92388 | 0.66 | 0.541902 |
Target: 5'- uGCCGUcGCUCCGcCGGCUCCuCcGGGUc -3' miRNA: 3'- -CGGCA-CGGGGUcGCCGGGGcGuCCCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 53497 | 0.66 | 0.541902 |
Target: 5'- cGUCGagGCCgCugcuGCGGCgUCGCAGcGGCc -3' miRNA: 3'- -CGGCa-CGGgGu---CGCCGgGGCGUC-CCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 225079 | 0.66 | 0.541902 |
Target: 5'- uGCUGcUGCCCgGGC-GCaCCUGCAGGa- -3' miRNA: 3'- -CGGC-ACGGGgUCGcCG-GGGCGUCCcg -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 129179 | 0.66 | 0.539207 |
Target: 5'- cGgCGUGCggcgguuuggguuuCgCCGGCGGUUcgaccucgucgCCGCGGGGCg -3' miRNA: 3'- -CgGCACG--------------G-GGUCGCCGG-----------GGCGUCCCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 175988 | 0.66 | 0.536517 |
Target: 5'- cGCCGUggagauccccuguuaGCCCCGGaCGGUgUuuGUGGGGUc -3' miRNA: 3'- -CGGCA---------------CGGGGUC-GCCG-GggCGUCCCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 237382 | 0.66 | 0.532938 |
Target: 5'- aGCCuGUGCCCuCGGCgucGGCaUgGCGGGGg -3' miRNA: 3'- -CGG-CACGGG-GUCG---CCGgGgCGUCCCg -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 11569 | 0.66 | 0.532938 |
Target: 5'- cGUCGUGCgCCGGa--CUCUGCGGGGUc -3' miRNA: 3'- -CGGCACGgGGUCgccGGGGCGUCCCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 148578 | 0.66 | 0.532938 |
Target: 5'- aCCG-GCCaaaagaCCGcGCGGCgCCCGUcGGGCc -3' miRNA: 3'- cGGCaCGG------GGU-CGCCG-GGGCGuCCCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 99795 | 0.66 | 0.532938 |
Target: 5'- aGuuGUGCCCCAGCccUCCUGguGGuCg -3' miRNA: 3'- -CggCACGGGGUCGccGGGGCguCCcG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 154114 | 0.66 | 0.532938 |
Target: 5'- aCCG-GCCCaucucGCGGCCggGCAaGGGCg -3' miRNA: 3'- cGGCaCGGGgu---CGCCGGggCGU-CCCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 39692 | 0.66 | 0.532938 |
Target: 5'- cGCCGUGCgCCAGaUGGUgCC-CAuGGCu -3' miRNA: 3'- -CGGCACGgGGUC-GCCGgGGcGUcCCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 239919 | 0.66 | 0.532938 |
Target: 5'- cGCCGUGCgCCAGaUGGUgCC-CAuGGCu -3' miRNA: 3'- -CGGCACGgGGUC-GCCGgGGcGUcCCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 32990 | 0.66 | 0.532938 |
Target: 5'- ----aGCCCUGGCGgaugaaGCCCCGCA-GGCu -3' miRNA: 3'- cggcaCGGGGUCGC------CGGGGCGUcCCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 123327 | 0.66 | 0.532044 |
Target: 5'- aGCCGUccgaacaccgacgGCCCCAGCgccgcggccguGGCCuCCGaCAGccgcaccgacaGGCg -3' miRNA: 3'- -CGGCA-------------CGGGGUCG-----------CCGG-GGC-GUC-----------CCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 3659 | 0.66 | 0.527585 |
Target: 5'- cGCCGUcuGCCUCGGCGGCcgggaCCCucgucggaugcugacGCgggauauaaaAGGGCg -3' miRNA: 3'- -CGGCA--CGGGGUCGCCG-----GGG---------------CG----------UCCCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 69264 | 0.66 | 0.524916 |
Target: 5'- gGCCGacgugGCaagcggucuguuuaaCCAGCGcgcaGCCCCGacaCAGGGCg -3' miRNA: 3'- -CGGCa----CGg--------------GGUCGC----CGGGGC---GUCCCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 124030 | 0.66 | 0.524027 |
Target: 5'- gGUCGcgGCCgUAGaCGGCCagcgugCCGCGGcGGCg -3' miRNA: 3'- -CGGCa-CGGgGUC-GCCGG------GGCGUC-CCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 129993 | 0.66 | 0.524027 |
Target: 5'- uGCCGcUGCgCCGGCGGCggCgCGCAacGGCc -3' miRNA: 3'- -CGGC-ACGgGGUCGCCG--GgGCGUc-CCG- -5' |
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14286 | 3' | -66.9 | NC_003521.1 | + | 89958 | 0.66 | 0.524027 |
Target: 5'- aGCCGcGUCuCUGGCGGCCgUuCGGGGUu -3' miRNA: 3'- -CGGCaCGG-GGUCGCCGGgGcGUCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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