miRNA display CGI


Results 61 - 80 of 289 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 3' -66.9 NC_003521.1 + 124030 0.66 0.524027
Target:  5'- gGUCGcgGCCgUAGaCGGCCagcgugCCGCGGcGGCg -3'
miRNA:   3'- -CGGCa-CGGgGUC-GCCGG------GGCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 129993 0.66 0.524027
Target:  5'- uGCCGcUGCgCCGGCGGCggCgCGCAacGGCc -3'
miRNA:   3'- -CGGC-ACGgGGUCGCCG--GgGCGUc-CCG- -5'
14286 3' -66.9 NC_003521.1 + 89958 0.66 0.524027
Target:  5'- aGCCGcGUCuCUGGCGGCCgUuCGGGGUu -3'
miRNA:   3'- -CGGCaCGG-GGUCGCCGGgGcGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 183793 0.66 0.523139
Target:  5'- --aGUGCCUgGGCGGCguguucaUCCGCGuGGCg -3'
miRNA:   3'- cggCACGGGgUCGCCG-------GGGCGUcCCG- -5'
14286 3' -66.9 NC_003521.1 + 25388 0.66 0.523139
Target:  5'- cGCCa-GCaCCC-GCGGCUCUGCuucacggAGGGCu -3'
miRNA:   3'- -CGGcaCG-GGGuCGCCGGGGCG-------UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 114920 0.66 0.521365
Target:  5'- -aCGUGUCCCucgAGCGGCUgcuggagagcugcuCgCGCAGcGGCg -3'
miRNA:   3'- cgGCACGGGG---UCGCCGG--------------G-GCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 100103 0.66 0.517824
Target:  5'- cGUCGUGCgacagcaggaugcgaCCCcgcggcuGGCGGUCCUGCgggaaggccguGGGGCu -3'
miRNA:   3'- -CGGCACG---------------GGG-------UCGCCGGGGCG-----------UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 163746 0.66 0.515175
Target:  5'- cGCCGgcgGCaaCAGCGGCgCUcacgGCGGcGGCa -3'
miRNA:   3'- -CGGCa--CGggGUCGCCGgGG----CGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 136615 0.66 0.515175
Target:  5'- cGCUGgGCUgCAGCagcacguaaucGGCCacgggCGCGGGGCg -3'
miRNA:   3'- -CGGCaCGGgGUCG-----------CCGGg----GCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 96776 0.66 0.515175
Target:  5'- cGCCGUcGCCgCCggcagcAGCGGCggCGCucGGGCa -3'
miRNA:   3'- -CGGCA-CGG-GG------UCGCCGggGCGu-CCCG- -5'
14286 3' -66.9 NC_003521.1 + 149043 0.66 0.515175
Target:  5'- aCCGccGCCCgGguguggggggauGCGGgaCCCGCGGGGUa -3'
miRNA:   3'- cGGCa-CGGGgU------------CGCCg-GGGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 84905 0.66 0.515175
Target:  5'- gGCCGUcaGCgCC--CGGUCCaGCAGGGCc -3'
miRNA:   3'- -CGGCA--CGgGGucGCCGGGgCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 30260 0.66 0.515175
Target:  5'- uGCCGUGgCgCAGCuGaCCCUGgCGGGcGCg -3'
miRNA:   3'- -CGGCACgGgGUCGcC-GGGGC-GUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 45421 0.66 0.515175
Target:  5'- aGCCgGUGCCCgccguCGGCgcggucauGGCCUCGCcGuGGCg -3'
miRNA:   3'- -CGG-CACGGG-----GUCG--------CCGGGGCGuC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 151810 0.66 0.515175
Target:  5'- cGCCGUGgCgCCGGUgGGgCCCGC--GGCa -3'
miRNA:   3'- -CGGCACgG-GGUCG-CCgGGGCGucCCG- -5'
14286 3' -66.9 NC_003521.1 + 72965 0.66 0.514293
Target:  5'- uGCCGa-CCUCaugaagaAGCGGCCgCGgGGGGCc -3'
miRNA:   3'- -CGGCacGGGG-------UCGCCGGgGCgUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 118198 0.66 0.514293
Target:  5'- aGUCGggGCCgCCGagcgcGCGGCCgCCGCcgucgccGGGGUg -3'
miRNA:   3'- -CGGCa-CGG-GGU-----CGCCGG-GGCG-------UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 127730 0.67 0.509892
Target:  5'- aGCCGcuccUGCaCCCGGCGGCCguCUGCgccucguagcccggaAGGuGCu -3'
miRNA:   3'- -CGGC----ACG-GGGUCGCCGG--GGCG---------------UCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 2382 0.67 0.509892
Target:  5'- gGCCGcccugcgccuccUGCCCgaccucgaccgcgagCacugggAGCGGCCCCGCuGGGa -3'
miRNA:   3'- -CGGC------------ACGGG---------------G------UCGCCGGGGCGuCCCg -5'
14286 3' -66.9 NC_003521.1 + 202609 0.67 0.509892
Target:  5'- gGCCGcccugcgccuccUGCCCgaccucgaccgcgagCacugggAGCGGCCCCGCuGGGa -3'
miRNA:   3'- -CGGC------------ACGGG---------------G------UCGCCGGGGCGuCCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.