miRNA display CGI


Results 81 - 100 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 3' -66.9 NC_003521.1 + 92041 0.67 0.506383
Target:  5'- aGCCGcgGCUCCu-CGGCgcgaCCGCcgAGGGCa -3'
miRNA:   3'- -CGGCa-CGGGGucGCCGg---GGCG--UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 71281 0.67 0.506383
Target:  5'- gGCgGggGCCgCGGCacgGGCCCC-UGGGGCa -3'
miRNA:   3'- -CGgCa-CGGgGUCG---CCGGGGcGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 115909 0.67 0.506383
Target:  5'- aCCGUGCUgaaCAcgGGCCCCGUgcugugggagaAGGGCg -3'
miRNA:   3'- cGGCACGGg--GUcgCCGGGGCG-----------UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 184793 0.67 0.506383
Target:  5'- cGCCuGgacGCCCUGGUGGCCgccuccgaCUGguGGGUg -3'
miRNA:   3'- -CGG-Ca--CGGGGUCGCCGG--------GGCguCCCG- -5'
14286 3' -66.9 NC_003521.1 + 54205 0.67 0.506383
Target:  5'- aCCGcUGCUggCCGGUGGUCCgGCAguaccgacugccGGGCg -3'
miRNA:   3'- cGGC-ACGG--GGUCGCCGGGgCGU------------CCCG- -5'
14286 3' -66.9 NC_003521.1 + 55711 0.67 0.505508
Target:  5'- cCCGUGCUCCAGCaugucggcgcgcaGcGCCUcccagCGCGcGGGCg -3'
miRNA:   3'- cGGCACGGGGUCG-------------C-CGGG-----GCGU-CCCG- -5'
14286 3' -66.9 NC_003521.1 + 55608 0.67 0.505508
Target:  5'- cGUCGUacacgcaGUCCCGcGCGGCCCacacCG-AGGGCg -3'
miRNA:   3'- -CGGCA-------CGGGGU-CGCCGGG----GCgUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 120890 0.67 0.501139
Target:  5'- uGCCccuggagcggGUGCCCguCAGCGGCauccaCcuguuccaggcccacCCGCGGGGCg -3'
miRNA:   3'- -CGG----------CACGGG--GUCGCCG-----G---------------GGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 2212 0.67 0.497656
Target:  5'- gGCCG-GCCCUAcGCccaGGCCCUGCuAGuGCu -3'
miRNA:   3'- -CGGCaCGGGGU-CG---CCGGGGCG-UCcCG- -5'
14286 3' -66.9 NC_003521.1 + 129618 0.67 0.497656
Target:  5'- aGUCGaGUCgCCGGCcGCCCgGCGGGuGCu -3'
miRNA:   3'- -CGGCaCGG-GGUCGcCGGGgCGUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 43486 0.67 0.497656
Target:  5'- gGCCGUGCuggCCgCGGCGGCCaacauCCGuCAGcGCc -3'
miRNA:   3'- -CGGCACG---GG-GUCGCCGG-----GGC-GUCcCG- -5'
14286 3' -66.9 NC_003521.1 + 202440 0.67 0.497656
Target:  5'- gGCCG-GCCCUAcGCccaGGCCCUGCuAGuGCu -3'
miRNA:   3'- -CGGCaCGGGGU-CG---CCGGGGCG-UCcCG- -5'
14286 3' -66.9 NC_003521.1 + 238354 0.67 0.497656
Target:  5'- gGCCG-GCgCCGucGCGuaCCCauaGCGGGGCg -3'
miRNA:   3'- -CGGCaCGgGGU--CGCcgGGG---CGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 146797 0.67 0.497656
Target:  5'- gGCgG-GCCCCGGCGaGCUaugugcgucacuCCGgaAGGGCg -3'
miRNA:   3'- -CGgCaCGGGGUCGC-CGG------------GGCg-UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 48006 0.67 0.497656
Target:  5'- cGCCGgGCUUCuGCGGCUgcugccagcgauCCGacaAGGGCa -3'
miRNA:   3'- -CGGCaCGGGGuCGCCGG------------GGCg--UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 5321 0.67 0.488998
Target:  5'- cGgCGUGCCCCGcCGGCCgCGacuccGGCg -3'
miRNA:   3'- -CgGCACGGGGUcGCCGGgGCguc--CCG- -5'
14286 3' -66.9 NC_003521.1 + 98473 0.67 0.488998
Target:  5'- gGCgGcgGCCgCGGCGGCCgUgGCGGcGGCc -3'
miRNA:   3'- -CGgCa-CGGgGUCGCCGG-GgCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 207048 0.67 0.488998
Target:  5'- gGCUGgGCCgCAGgccggaGGCgUUGCAGGGCa -3'
miRNA:   3'- -CGGCaCGGgGUCg-----CCGgGGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 100971 0.67 0.488998
Target:  5'- cGCCGUG-CCCGGCGcGCacggcguucucgCUCGCugagggaggacaGGGGCg -3'
miRNA:   3'- -CGGCACgGGGUCGC-CG------------GGGCG------------UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 89010 0.67 0.488998
Target:  5'- uGCCGcggGCCCCAcCGGCgCCaCGGcGGUg -3'
miRNA:   3'- -CGGCa--CGGGGUcGCCGgGGcGUC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.