miRNA display CGI


Results 21 - 40 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 3' -66.9 NC_003521.1 + 16977 0.66 0.524027
Target:  5'- aGCCGcagcagcaGCCgcagggaCAGCaGGCgCCCGCGGuGGCg -3'
miRNA:   3'- -CGGCa-------CGGg------GUCG-CCG-GGGCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 17424 0.72 0.243114
Target:  5'- cGCCGggGCgCCAcaCGGCCCgCGuCGGGGCg -3'
miRNA:   3'- -CGGCa-CGgGGUc-GCCGGG-GC-GUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 17808 0.68 0.414595
Target:  5'- gGCCGUGCgaCCGGCGGacgacgacccCCaCCGCcauaccaaguGGGCg -3'
miRNA:   3'- -CGGCACGg-GGUCGCC----------GG-GGCGu---------CCCG- -5'
14286 3' -66.9 NC_003521.1 + 18904 0.68 0.455104
Target:  5'- cGCCGcggcaGCCCCgaagGGUGGCgCCGCGcgccGGCa -3'
miRNA:   3'- -CGGCa----CGGGG----UCGCCGgGGCGUc---CCG- -5'
14286 3' -66.9 NC_003521.1 + 20508 0.66 0.557252
Target:  5'- aCCGUGCuggucCCCAucgugugcauguucGUGGCCUauaCGCuGGGCa -3'
miRNA:   3'- cGGCACG-----GGGU--------------CGCCGGG---GCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 21561 0.68 0.446829
Target:  5'- uGCCa-GCCCCuGCgGGCCCUGCucuacccGGCg -3'
miRNA:   3'- -CGGcaCGGGGuCG-CCGGGGCGuc-----CCG- -5'
14286 3' -66.9 NC_003521.1 + 25388 0.66 0.523139
Target:  5'- cGCCa-GCaCCC-GCGGCUCUGCuucacggAGGGCu -3'
miRNA:   3'- -CGGcaCG-GGGuCGCCGGGGCG-------UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 30260 0.66 0.515175
Target:  5'- uGCCGUGgCgCAGCuGaCCCUGgCGGGcGCg -3'
miRNA:   3'- -CGGCACgGgGUCGcC-GGGGC-GUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 32904 0.7 0.32768
Target:  5'- cGCCGUGCCCgccgcccccggcguaGGUGGCgCCGgagagcccaAGGGCg -3'
miRNA:   3'- -CGGCACGGGg--------------UCGCCGgGGCg--------UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 32990 0.66 0.532938
Target:  5'- ----aGCCCUGGCGgaugaaGCCCCGCA-GGCu -3'
miRNA:   3'- cggcaCGGGGUCGC------CGGGGCGUcCCG- -5'
14286 3' -66.9 NC_003521.1 + 34256 0.68 0.430535
Target:  5'- uGUCGUGCCCCGucGCccuaucGUCCUGUcacgGGGGCg -3'
miRNA:   3'- -CGGCACGGGGU--CGc-----CGGGGCG----UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 34644 0.72 0.259448
Target:  5'- uGCuCGcgGCCCUGGCcGCCCUGCuccuGGGCu -3'
miRNA:   3'- -CG-GCa-CGGGGUCGcCGGGGCGu---CCCG- -5'
14286 3' -66.9 NC_003521.1 + 35018 0.68 0.446829
Target:  5'- cGUCGUG-CCCGGCGGaCgCgGUuGGGCa -3'
miRNA:   3'- -CGGCACgGGGUCGCC-GgGgCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 35490 0.66 0.541902
Target:  5'- uGCCGccGCCgaGGaGGCgCCGUAGGGUg -3'
miRNA:   3'- -CGGCa-CGGggUCgCCGgGGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 36393 0.76 0.138074
Target:  5'- uCCGUGCUgCUGGCGGCagCGCGGGGCg -3'
miRNA:   3'- cGGCACGG-GGUCGCCGggGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 36692 0.72 0.258889
Target:  5'- gGCCGgGCUCCGGCgccuGGCCCgagcagguggaggCGCAGuGGCg -3'
miRNA:   3'- -CGGCaCGGGGUCG----CCGGG-------------GCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 36848 0.67 0.475293
Target:  5'- uGUCGUccuacGCCUCGGCGGUgUCGUguccggauuugagcgAGGGCg -3'
miRNA:   3'- -CGGCA-----CGGGGUCGCCGgGGCG---------------UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 37469 0.73 0.222676
Target:  5'- cGCgCGgGCCaCC-GUGGUgCCGCAGGGCa -3'
miRNA:   3'- -CG-GCaCGG-GGuCGCCGgGGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 38351 0.67 0.46346
Target:  5'- aGCCGaagacgGCaCCCAGCucGUCCagcacuaGCAGGGCc -3'
miRNA:   3'- -CGGCa-----CG-GGGUCGc-CGGGg------CGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 39424 0.67 0.488136
Target:  5'- gGCCGUccaGUCCCguaGGCGGCgCCGUggcucccGGGGa -3'
miRNA:   3'- -CGGCA---CGGGG---UCGCCGgGGCG-------UCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.