miRNA display CGI


Results 41 - 60 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 3' -66.9 NC_003521.1 + 39586 0.73 0.199203
Target:  5'- uGCCG-GCgUCGGCGGUCCUGCccuGGGUg -3'
miRNA:   3'- -CGGCaCGgGGUCGCCGGGGCGu--CCCG- -5'
14286 3' -66.9 NC_003521.1 + 39692 0.66 0.532938
Target:  5'- cGCCGUGCgCCAGaUGGUgCC-CAuGGCu -3'
miRNA:   3'- -CGGCACGgGGUC-GCCGgGGcGUcCCG- -5'
14286 3' -66.9 NC_003521.1 + 39780 0.68 0.430535
Target:  5'- uCCGggcUGUUCCAGaaguugaGGCUCgGCGGGGCg -3'
miRNA:   3'- cGGC---ACGGGGUCg------CCGGGgCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 40327 0.67 0.48041
Target:  5'- uCCG-GCCUCcgcuGCgGGUCCCGgGGGGUg -3'
miRNA:   3'- cGGCaCGGGGu---CG-CCGGGGCgUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 42792 0.71 0.276078
Target:  5'- cCCGUGCagCCCGGCGGCUgcacgcgCCGCAacGGCa -3'
miRNA:   3'- cGGCACG--GGGUCGCCGG-------GGCGUc-CCG- -5'
14286 3' -66.9 NC_003521.1 + 43428 0.68 0.421723
Target:  5'- -gCGUGCCCgacgaggaggcggCGGCGGCCCUGgAacucucacagcGGGCc -3'
miRNA:   3'- cgGCACGGG-------------GUCGCCGGGGCgU-----------CCCG- -5'
14286 3' -66.9 NC_003521.1 + 43486 0.67 0.497656
Target:  5'- gGCCGUGCuggCCgCGGCGGCCaacauCCGuCAGcGCc -3'
miRNA:   3'- -CGGCACG---GG-GUCGCCGG-----GGC-GUCcCG- -5'
14286 3' -66.9 NC_003521.1 + 43648 0.67 0.471897
Target:  5'- cGCCaccGCCuCCAGCccugccaGGCCCagcgcggaacuuccaGCAGGGCc -3'
miRNA:   3'- -CGGca-CGG-GGUCG-------CCGGGg--------------CGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 43852 0.67 0.471049
Target:  5'- cCCGUcacaggcGCCCCGGcCGGCUCC-C-GGGCc -3'
miRNA:   3'- cGGCA-------CGGGGUC-GCCGGGGcGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 44869 0.67 0.48041
Target:  5'- aCCGcUGCCagagCCuGUGGCCCaCGCAGGa- -3'
miRNA:   3'- cGGC-ACGG----GGuCGCCGGG-GCGUCCcg -5'
14286 3' -66.9 NC_003521.1 + 45018 0.68 0.42252
Target:  5'- uCCGa-UCCCA-CGGCCgUGCAGGGCg -3'
miRNA:   3'- cGGCacGGGGUcGCCGGgGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 45421 0.66 0.515175
Target:  5'- aGCCgGUGCCCgccguCGGCgcggucauGGCCUCGCcGuGGCg -3'
miRNA:   3'- -CGG-CACGGG-----GUCG--------CCGGGGCGuC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 45624 0.71 0.288645
Target:  5'- cGCCGacgcagacgGCCaCCGccGcCGGCUCCGCGGGGUc -3'
miRNA:   3'- -CGGCa--------CGG-GGU--C-GCCGGGGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 46736 0.76 0.144652
Target:  5'- cUCGUGCCCCAG-GGCCCCcaGCAGcuGGUg -3'
miRNA:   3'- cGGCACGGGGUCgCCGGGG--CGUC--CCG- -5'
14286 3' -66.9 NC_003521.1 + 47859 0.66 0.550012
Target:  5'- cGCCGUGgCCgAGaacaugcugaucaUGGCCCaguguccCAGGGCg -3'
miRNA:   3'- -CGGCACgGGgUC-------------GCCGGGgc-----GUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 48006 0.67 0.497656
Target:  5'- cGCCGgGCUUCuGCGGCUgcugccagcgauCCGacaAGGGCa -3'
miRNA:   3'- -CGGCaCGGGGuCGCCGG------------GGCg--UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 49749 0.66 0.569073
Target:  5'- cGCCGccGCCaCCA-CGGUCgCCGCGGGa- -3'
miRNA:   3'- -CGGCa-CGG-GGUcGCCGG-GGCGUCCcg -5'
14286 3' -66.9 NC_003521.1 + 53228 0.68 0.419339
Target:  5'- gGCCGUGCCCaccggcagcagaaAGCGGUCgCaGCAGaGGa -3'
miRNA:   3'- -CGGCACGGGg------------UCGCCGGgG-CGUC-CCg -5'
14286 3' -66.9 NC_003521.1 + 53497 0.66 0.541902
Target:  5'- cGUCGagGCCgCugcuGCGGCgUCGCAGcGGCc -3'
miRNA:   3'- -CGGCa-CGGgGu---CGCCGgGGCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 53628 0.68 0.458437
Target:  5'- cCCGUGCacggucaugauccaCCAGUGGCCuCUGgcggucauCAGGGCu -3'
miRNA:   3'- cGGCACGg-------------GGUCGCCGG-GGC--------GUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.