miRNA display CGI


Results 61 - 80 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 3' -66.9 NC_003521.1 + 53968 0.68 0.446829
Target:  5'- aGCCGUGCUgCAc--GCCgCCGCuGGGCc -3'
miRNA:   3'- -CGGCACGGgGUcgcCGG-GGCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 54078 0.69 0.369026
Target:  5'- cGCCGaGCCCCAGCaugGGCUCgccuaGCAGGuCg -3'
miRNA:   3'- -CGGCaCGGGGUCG---CCGGGg----CGUCCcG- -5'
14286 3' -66.9 NC_003521.1 + 54205 0.67 0.506383
Target:  5'- aCCGcUGCUggCCGGUGGUCCgGCAguaccgacugccGGGCg -3'
miRNA:   3'- cGGC-ACGG--GGUCGCCGGGgCGU------------CCCG- -5'
14286 3' -66.9 NC_003521.1 + 55222 0.72 0.257775
Target:  5'- uCCGUcggcguuuaauacaGCCCCgAGCGGCucgccggcgagCCCGCGGGGg -3'
miRNA:   3'- cGGCA--------------CGGGG-UCGCCG-----------GGGCGUCCCg -5'
14286 3' -66.9 NC_003521.1 + 55608 0.67 0.505508
Target:  5'- cGUCGUacacgcaGUCCCGcGCGGCCCacacCG-AGGGCg -3'
miRNA:   3'- -CGGCA-------CGGGGU-CGCCGGG----GCgUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 55711 0.67 0.505508
Target:  5'- cCCGUGCUCCAGCaugucggcgcgcaGcGCCUcccagCGCGcGGGCg -3'
miRNA:   3'- cGGCACGGGGUCG-------------C-CGGG-----GCGU-CCCG- -5'
14286 3' -66.9 NC_003521.1 + 55967 0.69 0.369026
Target:  5'- uGCUGUGCCUgGGguCGGCagUCGCAGcGGCg -3'
miRNA:   3'- -CGGCACGGGgUC--GCCGg-GGCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 56314 0.69 0.391379
Target:  5'- -aCGUGauggaugaagaCCaCCGaggcGCGGCCgCGCAGGGCg -3'
miRNA:   3'- cgGCAC-----------GG-GGU----CGCCGGgGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 57466 0.69 0.376379
Target:  5'- aCCG-GCCCCAGUaGCCgUgGCAGuGGCa -3'
miRNA:   3'- cGGCaCGGGGUCGcCGG-GgCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 59614 0.74 0.194775
Target:  5'- gGCgGcgGCCCCGGCGGCgaCCGCGGcucgcaGGCg -3'
miRNA:   3'- -CGgCa-CGGGGUCGCCGg-GGCGUC------CCG- -5'
14286 3' -66.9 NC_003521.1 + 60669 0.68 0.406762
Target:  5'- gGCaCGaUGCUCUucgugcuGCGGCCgCGCGGGGg -3'
miRNA:   3'- -CG-GC-ACGGGGu------CGCCGGgGCGUCCCg -5'
14286 3' -66.9 NC_003521.1 + 60877 0.7 0.338545
Target:  5'- uGUgGUGCCgCAGUucucggagaucuucGGCauCCCGCAGGGUc -3'
miRNA:   3'- -CGgCACGGgGUCG--------------CCG--GGGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 62101 0.66 0.569073
Target:  5'- aCCGggaacGCUUCGGC-GCCCgCGCGGGGa -3'
miRNA:   3'- cGGCa----CGGGGUCGcCGGG-GCGUCCCg -5'
14286 3' -66.9 NC_003521.1 + 64746 0.67 0.48041
Target:  5'- cGCCGUgGCCaagacgCCGGcCGGCgCgGCAccGGGCg -3'
miRNA:   3'- -CGGCA-CGG------GGUC-GCCGgGgCGU--CCCG- -5'
14286 3' -66.9 NC_003521.1 + 65715 0.71 0.276666
Target:  5'- aGCgGcGCCgCGGCGGCCCUGgccggcaaaaAGGGCa -3'
miRNA:   3'- -CGgCaCGGgGUCGCCGGGGCg---------UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 66069 0.68 0.42252
Target:  5'- uGCCGUacgugGCagCCgAGCGaGCCCUGCGuuGGGCc -3'
miRNA:   3'- -CGGCA-----CG--GGgUCGC-CGGGGCGU--CCCG- -5'
14286 3' -66.9 NC_003521.1 + 67533 0.66 0.569073
Target:  5'- cCCGUaagaCCCAGCGGCCCUuCAaGGUu -3'
miRNA:   3'- cGGCAcg--GGGUCGCCGGGGcGUcCCG- -5'
14286 3' -66.9 NC_003521.1 + 67563 0.72 0.232706
Target:  5'- aCUGUGUCaggCGGCgGGCCCCGC-GGGCc -3'
miRNA:   3'- cGGCACGGg--GUCG-CCGGGGCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 69264 0.66 0.524916
Target:  5'- gGCCGacgugGCaagcggucuguuuaaCCAGCGcgcaGCCCCGacaCAGGGCg -3'
miRNA:   3'- -CGGCa----CGg--------------GGUCGC----CGGGGC---GUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 70069 0.7 0.347565
Target:  5'- uGUCGgGCCagcacguaCAGCGGgUugCCGCAGGGCa -3'
miRNA:   3'- -CGGCaCGGg-------GUCGCCgG--GGCGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.