miRNA display CGI


Results 81 - 100 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 3' -66.9 NC_003521.1 + 71281 0.67 0.506383
Target:  5'- gGCgGggGCCgCGGCacgGGCCCC-UGGGGCa -3'
miRNA:   3'- -CGgCa-CGGgGUCG---CCGGGGcGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 72965 0.66 0.514293
Target:  5'- uGCCGa-CCUCaugaagaAGCGGCCgCGgGGGGCc -3'
miRNA:   3'- -CGGCacGGGG-------UCGCCGGgGCgUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 72983 0.71 0.288645
Target:  5'- aGCCGacgaGCCCgCGGCGGUcgugCCCGgGGGGg -3'
miRNA:   3'- -CGGCa---CGGG-GUCGCCG----GGGCgUCCCg -5'
14286 3' -66.9 NC_003521.1 + 74564 0.71 0.282605
Target:  5'- uGCgCGUGCCCguGagcaCGGCCCgcuCGCcGGGCg -3'
miRNA:   3'- -CG-GCACGGGguC----GCCGGG---GCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 74738 0.7 0.32701
Target:  5'- uGCCGgcccGCUCCcGCuauGGCCCUGCGGGaGUg -3'
miRNA:   3'- -CGGCa---CGGGGuCG---CCGGGGCGUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 75534 0.73 0.208323
Target:  5'- aGCUGUGUCaguuCAGCGGCgCCgGCGGcGGCu -3'
miRNA:   3'- -CGGCACGGg---GUCGCCG-GGgCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 75993 0.68 0.414595
Target:  5'- cGCCG-GCCgCCGGUuccuccucCCCCGCGGGcGCu -3'
miRNA:   3'- -CGGCaCGG-GGUCGcc------GGGGCGUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 76385 0.66 0.550012
Target:  5'- gGCCGcgGCCgCGGUGGCgCUGCuagcaccAGcGGCg -3'
miRNA:   3'- -CGGCa-CGGgGUCGCCGgGGCG-------UC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 76702 0.68 0.438639
Target:  5'- uCCGUGUagCGGUGGCaCCgGCGGcGGCa -3'
miRNA:   3'- cGGCACGggGUCGCCG-GGgCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 77707 0.77 0.123976
Target:  5'- aGCCGUGgCggcguuguuggcgaCGGCGGCCUCGguGGGCg -3'
miRNA:   3'- -CGGCACgGg-------------GUCGCCGGGGCguCCCG- -5'
14286 3' -66.9 NC_003521.1 + 83554 0.66 0.554533
Target:  5'- cGCCGuUGCCCCggaaaggcgacgGGUcucuugcucuuggucGGaCCUCGCGGcGGCg -3'
miRNA:   3'- -CGGC-ACGGGG------------UCG---------------CC-GGGGCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 83916 0.68 0.430535
Target:  5'- gGCCGUGUUCUucucguaCGGCagCCGCAGGGg -3'
miRNA:   3'- -CGGCACGGGGuc-----GCCGg-GGCGUCCCg -5'
14286 3' -66.9 NC_003521.1 + 84905 0.66 0.515175
Target:  5'- gGCCGUcaGCgCC--CGGUCCaGCAGGGCc -3'
miRNA:   3'- -CGGCA--CGgGGucGCCGGGgCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 85317 0.73 0.227644
Target:  5'- cGCCGUcGCUCCAgccuuggcccGCGGCCcgCCGCAGGccgGCg -3'
miRNA:   3'- -CGGCA-CGGGGU----------CGCCGG--GGCGUCC---CG- -5'
14286 3' -66.9 NC_003521.1 + 85485 0.67 0.48041
Target:  5'- uGCCgGUGCCC--GCGcCCCCGCcGGGa -3'
miRNA:   3'- -CGG-CACGGGguCGCcGGGGCGuCCCg -5'
14286 3' -66.9 NC_003521.1 + 86218 0.7 0.338545
Target:  5'- gGCgGcgGCaCgCCGGCGGCCUugagcuccuugacgUGCAGGGCg -3'
miRNA:   3'- -CGgCa-CG-G-GGUCGCCGGG--------------GCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 87719 0.69 0.391379
Target:  5'- uGCCGUcgcgcGCgCCCGGCGG-CgUGguGGGCc -3'
miRNA:   3'- -CGGCA-----CG-GGGUCGCCgGgGCguCCCG- -5'
14286 3' -66.9 NC_003521.1 + 87756 0.71 0.276666
Target:  5'- cCCGgGCCCCGGCGGCggaggaggCCUG-GGGGCc -3'
miRNA:   3'- cGGCaCGGGGUCGCCG--------GGGCgUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 88465 0.72 0.232706
Target:  5'- cGCC--GCCCCGGcCGGCCCCagaGCAGcgucGGCg -3'
miRNA:   3'- -CGGcaCGGGGUC-GCCGGGG---CGUC----CCG- -5'
14286 3' -66.9 NC_003521.1 + 88527 0.71 0.294785
Target:  5'- aGCCGUGCaggcgcaCCGaaaCGGCCUCcucgggGCAGGGCa -3'
miRNA:   3'- -CGGCACGg------GGUc--GCCGGGG------CGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.