miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 3' -66.9 NC_003521.1 + 240554 0.67 0.48041
Target:  5'- uCCG-GCCUCcgcuGCgGGUCCCGgGGGGUg -3'
miRNA:   3'- cGGCaCGGGGu---CG-CCGGGGCgUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 240007 0.68 0.430535
Target:  5'- uCCGggcUGUUCCAGaaguugaGGCUCgGCGGGGCg -3'
miRNA:   3'- cGGC---ACGGGGUCg------CCGGGgCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 239919 0.66 0.532938
Target:  5'- cGCCGUGCgCCAGaUGGUgCC-CAuGGCu -3'
miRNA:   3'- -CGGCACGgGGUC-GCCGgGGcGUcCCG- -5'
14286 3' -66.9 NC_003521.1 + 239651 0.67 0.488136
Target:  5'- gGCCGUccaGUCCCguaGGCGGCgCCGUggcucccGGGGa -3'
miRNA:   3'- -CGGCA---CGGGG---UCGCCGgGGCG-------UCCCg -5'
14286 3' -66.9 NC_003521.1 + 238578 0.67 0.46346
Target:  5'- aGCCGaagacgGCaCCCAGCucGUCCagcacuaGCAGGGCc -3'
miRNA:   3'- -CGGCa-----CG-GGGUCGc-CGGGg------CGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 238354 0.67 0.497656
Target:  5'- gGCCG-GCgCCGucGCGuaCCCauaGCGGGGCg -3'
miRNA:   3'- -CGGCaCGgGGU--CGCcgGGG---CGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 237382 0.66 0.532938
Target:  5'- aGCCuGUGCCCuCGGCgucGGCaUgGCGGGGg -3'
miRNA:   3'- -CGG-CACGGG-GUCG---CCGgGgCGUCCCg -5'
14286 3' -66.9 NC_003521.1 + 235102 0.72 0.249001
Target:  5'- cGCCGUGCCCgGGCcguacacauaaccccGGugacggcgcccguuCCCCGCGgacGGGCg -3'
miRNA:   3'- -CGGCACGGGgUCG---------------CC--------------GGGGCGU---CCCG- -5'
14286 3' -66.9 NC_003521.1 + 234743 0.68 0.421723
Target:  5'- uUgGUGCCUCugcaacggcuGGCGugaucacGCCCUGCGGGGCc -3'
miRNA:   3'- cGgCACGGGG----------UCGC-------CGGGGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 234110 0.66 0.559974
Target:  5'- gGCCcUGCaccacggcgagaCCCAGCaGCgCUCGCGGGcGCa -3'
miRNA:   3'- -CGGcACG------------GGGUCGcCG-GGGCGUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 233405 0.73 0.199203
Target:  5'- uGCCGUcucggcuccugGCCCCGGUGGCUCCGac-GGCc -3'
miRNA:   3'- -CGGCA-----------CGGGGUCGCCGGGGCgucCCG- -5'
14286 3' -66.9 NC_003521.1 + 227615 0.68 0.42973
Target:  5'- cGCCGgucgGCCCUccaacacGGCGGCCCgaGC--GGCa -3'
miRNA:   3'- -CGGCa---CGGGG-------UCGCCGGGg-CGucCCG- -5'
14286 3' -66.9 NC_003521.1 + 226912 0.69 0.376379
Target:  5'- aGCgCG-GCCUCcGCGGCCCCcuccgcGCcGGGCc -3'
miRNA:   3'- -CG-GCaCGGGGuCGCCGGGG------CGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 226845 0.71 0.288645
Target:  5'- cGCCGccGCgCCgGGCaGGCCCauCAGGGCg -3'
miRNA:   3'- -CGGCa-CG-GGgUCG-CCGGGgcGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 226344 0.67 0.466826
Target:  5'- uGCgCGcGCCCCGcggguagcgccGCGggagcggcggcugacGCCgCCGCAGGGCc -3'
miRNA:   3'- -CG-GCaCGGGGU-----------CGC---------------CGG-GGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 225575 0.69 0.376379
Target:  5'- cCCGUGUcguccuggcgCUCGGCGGCCUCGCGcucGGCc -3'
miRNA:   3'- cGGCACG----------GGGUCGCCGGGGCGUc--CCG- -5'
14286 3' -66.9 NC_003521.1 + 225079 0.66 0.541902
Target:  5'- uGCUGcUGCCCgGGC-GCaCCUGCAGGa- -3'
miRNA:   3'- -CGGC-ACGGGgUCGcCG-GGGCGUCCcg -5'
14286 3' -66.9 NC_003521.1 + 224244 0.72 0.253905
Target:  5'- uCCGUccuCCCCGGUcGCCUCGCAGGcGCa -3'
miRNA:   3'- cGGCAc--GGGGUCGcCGGGGCGUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 223793 0.66 0.550012
Target:  5'- cGCCGUggGCCgCCAGacgaCGGgCCUGCGccgccgccaccgcGGGCg -3'
miRNA:   3'- -CGGCA--CGG-GGUC----GCCgGGGCGU-------------CCCG- -5'
14286 3' -66.9 NC_003521.1 + 223468 0.66 0.541902
Target:  5'- gGCCGccGCgCCGGCgucacGGCCCgggagGUGGGGCg -3'
miRNA:   3'- -CGGCa-CGgGGUCG-----CCGGGg----CGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.