miRNA display CGI


Results 21 - 40 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 3' -66.9 NC_003521.1 + 223335 0.67 0.48041
Target:  5'- uGCCGcagauaggUGCCCCA--GGCCUCGgCGGcGGCc -3'
miRNA:   3'- -CGGC--------ACGGGGUcgCCGGGGC-GUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 223333 0.71 0.270827
Target:  5'- cGCCGUGa-CCGGCGGCgCCGCuaccGGuGCc -3'
miRNA:   3'- -CGGCACggGGUCGCCGgGGCGu---CC-CG- -5'
14286 3' -66.9 NC_003521.1 + 223172 0.72 0.237862
Target:  5'- cGUgGUGCCCCGGUGcuggcguacguaGCUCCGCAGcGCg -3'
miRNA:   3'- -CGgCACGGGGUCGC------------CGGGGCGUCcCG- -5'
14286 3' -66.9 NC_003521.1 + 221829 0.66 0.569073
Target:  5'- cGuuGUGCaaCAGCuGGCCgCUGU-GGGCg -3'
miRNA:   3'- -CggCACGggGUCG-CCGG-GGCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 218473 0.67 0.46346
Target:  5'- cGCCGUgGgCgCAGUGGCCCCGgAcgucGGGa -3'
miRNA:   3'- -CGGCA-CgGgGUCGCCGGGGCgU----CCCg -5'
14286 3' -66.9 NC_003521.1 + 216400 0.66 0.569073
Target:  5'- cGCCG-GCCCCugcgccgucuGGCuuucuauGCUCCGC-GGGCc -3'
miRNA:   3'- -CGGCaCGGGG----------UCGc------CGGGGCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 212670 0.66 0.524027
Target:  5'- aGCa-UGCCCCAGaCGGgcagcguaUCCCGCAGGu- -3'
miRNA:   3'- -CGgcACGGGGUC-GCC--------GGGGCGUCCcg -5'
14286 3' -66.9 NC_003521.1 + 212493 0.67 0.46346
Target:  5'- aUCG-GCCaCCGGCGGUCC-GCAGGccGCg -3'
miRNA:   3'- cGGCaCGG-GGUCGCCGGGgCGUCC--CG- -5'
14286 3' -66.9 NC_003521.1 + 212157 0.68 0.438639
Target:  5'- gGCCGUGUCCauguGcCGcGCCuuGCccAGGGCc -3'
miRNA:   3'- -CGGCACGGGgu--C-GC-CGGggCG--UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 212023 0.72 0.243114
Target:  5'- gGCCGUGUgCCaAGUGGCaugagagggCGCGGGGCg -3'
miRNA:   3'- -CGGCACGgGG-UCGCCGgg-------GCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 211437 0.68 0.430535
Target:  5'- cGUCGUcGUCCUccuCGGCCUCGCggucGGGGCa -3'
miRNA:   3'- -CGGCA-CGGGGuc-GCCGGGGCG----UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 211320 0.69 0.354618
Target:  5'- cGCgG-GUCaacaGGCGGUCCCGCGGGcGCg -3'
miRNA:   3'- -CGgCaCGGgg--UCGCCGGGGCGUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 209532 0.72 0.237862
Target:  5'- cGCCGcUGCCgCGGUuauGcGCCCgGCGGGGUg -3'
miRNA:   3'- -CGGC-ACGGgGUCG---C-CGGGgCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 209398 0.66 0.569073
Target:  5'- aGUCGU-CUUCGGCGGCgCa-CAGGGCa -3'
miRNA:   3'- -CGGCAcGGGGUCGCCGgGgcGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 209251 0.7 0.32701
Target:  5'- uCCGUGCC--AGCGuGUCCCGCGaccuGGGCu -3'
miRNA:   3'- cGGCACGGggUCGC-CGGGGCGU----CCCG- -5'
14286 3' -66.9 NC_003521.1 + 209205 0.66 0.550915
Target:  5'- cGUCG-GCCgCGGUGGCCCUGCca-GCu -3'
miRNA:   3'- -CGGCaCGGgGUCGCCGGGGCGuccCG- -5'
14286 3' -66.9 NC_003521.1 + 207724 0.66 0.545501
Target:  5'- cGCCGUcaucggcuggcuggaGCCCguGCagaaGGCcaucuucauggaCCCGCuGGGCg -3'
miRNA:   3'- -CGGCA---------------CGGGguCG----CCG------------GGGCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 207186 0.68 0.446829
Target:  5'- uGCUGgccGCCCCuccaCGGCCUguUGCuGGGCg -3'
miRNA:   3'- -CGGCa--CGGGGuc--GCCGGG--GCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 207048 0.67 0.488998
Target:  5'- gGCUGgGCCgCAGgccggaGGCgUUGCAGGGCa -3'
miRNA:   3'- -CGGCaCGGgGUCg-----CCGgGGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 206150 0.69 0.361772
Target:  5'- gGCCGgggaaagGCCuCCgAGaaGCCCaggaGCAGGGCg -3'
miRNA:   3'- -CGGCa------CGG-GG-UCgcCGGGg---CGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.