miRNA display CGI


Results 41 - 60 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 3' -66.9 NC_003521.1 + 204026 0.75 0.16998
Target:  5'- cGCCGU-CCgCgAGCGGCUCCGCAGcGCg -3'
miRNA:   3'- -CGGCAcGG-GgUCGCCGGGGCGUCcCG- -5'
14286 3' -66.9 NC_003521.1 + 202609 0.67 0.509892
Target:  5'- gGCCGcccugcgccuccUGCCCgaccucgaccgcgagCacugggAGCGGCCCCGCuGGGa -3'
miRNA:   3'- -CGGC------------ACGGG---------------G------UCGCCGGGGCGuCCCg -5'
14286 3' -66.9 NC_003521.1 + 202440 0.67 0.497656
Target:  5'- gGCCG-GCCCUAcGCccaGGCCCUGCuAGuGCu -3'
miRNA:   3'- -CGGCaCGGGGU-CG---CCGGGGCG-UCcCG- -5'
14286 3' -66.9 NC_003521.1 + 202283 0.66 0.569073
Target:  5'- uGCCGUGuCCCCAccucuGuCGaGCUCCGCc-GGCc -3'
miRNA:   3'- -CGGCAC-GGGGU-----C-GC-CGGGGCGucCCG- -5'
14286 3' -66.9 NC_003521.1 + 201676 0.66 0.569073
Target:  5'- aGCUGcGCCgCCGGUGGCa--GCAcacGGGCa -3'
miRNA:   3'- -CGGCaCGG-GGUCGCCGgggCGU---CCCG- -5'
14286 3' -66.9 NC_003521.1 + 200684 0.66 0.559974
Target:  5'- cGCCGUuuGCCUCugaaaacuaCGuGCUCCGCgAGGGCc -3'
miRNA:   3'- -CGGCA--CGGGGuc-------GC-CGGGGCG-UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 198754 0.68 0.438639
Target:  5'- uGCCGUGCUcgCUGGUcGCgCCGCucguGGGCg -3'
miRNA:   3'- -CGGCACGG--GGUCGcCGgGGCGu---CCCG- -5'
14286 3' -66.9 NC_003521.1 + 198271 0.67 0.488136
Target:  5'- aGCCGU--CCCAGCGGCaCCaGCagucaucGGGGUg -3'
miRNA:   3'- -CGGCAcgGGGUCGCCG-GGgCG-------UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 197155 0.68 0.438639
Target:  5'- uGCUGgaaGUUCCGcGCugGGCCUgGCAGGGCu -3'
miRNA:   3'- -CGGCa--CGGGGU-CG--CCGGGgCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 196976 0.7 0.340612
Target:  5'- gGCCGgggcGCCUguGaCGGgCCCGCGGccGGCg -3'
miRNA:   3'- -CGGCa---CGGGguC-GCCgGGGCGUC--CCG- -5'
14286 3' -66.9 NC_003521.1 + 196757 0.73 0.213016
Target:  5'- aCCGUcugcuGCCCCGGcCGGCgcgaCCGCGGGcGCg -3'
miRNA:   3'- cGGCA-----CGGGGUC-GCCGg---GGCGUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 196470 0.66 0.541902
Target:  5'- gGCCGcaGCCCCAGC-GCgUCGCGGaugcGGUg -3'
miRNA:   3'- -CGGCa-CGGGGUCGcCGgGGCGUC----CCG- -5'
14286 3' -66.9 NC_003521.1 + 195157 0.68 0.455104
Target:  5'- uCCG-GCCCCugauAGCGGgugugcgccggaCCCCGCGGagccGGCg -3'
miRNA:   3'- cGGCaCGGGG----UCGCC------------GGGGCGUC----CCG- -5'
14286 3' -66.9 NC_003521.1 + 194379 0.69 0.391379
Target:  5'- gGCCGaccaGCCCCcGCaGCCCCGCcGGa- -3'
miRNA:   3'- -CGGCa---CGGGGuCGcCGGGGCGuCCcg -5'
14286 3' -66.9 NC_003521.1 + 193201 0.67 0.46346
Target:  5'- cGCCGUcacgGCCgCCuggacgauGGCGGCCaaGUcGGGCg -3'
miRNA:   3'- -CGGCA----CGG-GG--------UCGCCGGggCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 186836 0.66 0.559974
Target:  5'- -aCG-GUCCUgcgaauGGCGGCCCaGCGGcGGCg -3'
miRNA:   3'- cgGCaCGGGG------UCGCCGGGgCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 186523 0.71 0.276078
Target:  5'- gGCgGUGUCgCCAGCgggGGCUCCgugggagGCAGGGCc -3'
miRNA:   3'- -CGgCACGG-GGUCG---CCGGGG-------CGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 186477 0.69 0.354618
Target:  5'- cGCCacGCCCCgAGUGGCCC---AGGGCg -3'
miRNA:   3'- -CGGcaCGGGG-UCGCCGGGgcgUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 186378 0.67 0.48041
Target:  5'- aCCaucGCCCCGuCGGCCCaagcaGCGGcGGCa -3'
miRNA:   3'- cGGca-CGGGGUcGCCGGGg----CGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 186297 0.76 0.141328
Target:  5'- cGCCGgGCCCCAGCGGCgCCgUGCAGauccuGGUc -3'
miRNA:   3'- -CGGCaCGGGGUCGCCG-GG-GCGUC-----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.