miRNA display CGI


Results 61 - 80 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 3' -66.9 NC_003521.1 + 184837 0.71 0.286822
Target:  5'- cGCCGUGgaCCGgcuGCGGCCCCugcacaucggcgugGUGGGGCu -3'
miRNA:   3'- -CGGCACggGGU---CGCCGGGG--------------CGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 184793 0.67 0.506383
Target:  5'- cGCCuGgacGCCCUGGUGGCCgccuccgaCUGguGGGUg -3'
miRNA:   3'- -CGG-Ca--CGGGGUCGCCGG--------GGCguCCCG- -5'
14286 3' -66.9 NC_003521.1 + 183793 0.66 0.523139
Target:  5'- --aGUGCCUgGGCGGCguguucaUCCGCGuGGCg -3'
miRNA:   3'- cggCACGGGgUCGCCG-------GGGCGUcCCG- -5'
14286 3' -66.9 NC_003521.1 + 182049 0.69 0.361772
Target:  5'- cGCCGgcgcgcgccGCCCUgcAGUGGCuggaccucagCCCGCAGuGGCu -3'
miRNA:   3'- -CGGCa--------CGGGG--UCGCCG----------GGGCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 179512 0.69 0.391379
Target:  5'- -aCGUGUCCCAGUaGUCCCaCGGGcGCg -3'
miRNA:   3'- cgGCACGGGGUCGcCGGGGcGUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 179049 0.68 0.438639
Target:  5'- cGCCGgaGCCggCGGCGGUCCCGgugaCGGGGa -3'
miRNA:   3'- -CGGCa-CGGg-GUCGCCGGGGC----GUCCCg -5'
14286 3' -66.9 NC_003521.1 + 178982 0.69 0.376379
Target:  5'- cGCCGcgGUUCC-GCGGCgCCCuccCAGGGCc -3'
miRNA:   3'- -CGGCa-CGGGGuCGCCG-GGGc--GUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 175988 0.66 0.536517
Target:  5'- cGCCGUggagauccccuguuaGCCCCGGaCGGUgUuuGUGGGGUc -3'
miRNA:   3'- -CGGCA---------------CGGGGUC-GCCG-GggCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 174718 0.72 0.248461
Target:  5'- -aCG-GCCUCcuggauaaagagGGCGGCCCaaCGCAGGGCu -3'
miRNA:   3'- cgGCaCGGGG------------UCGCCGGG--GCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 170691 0.71 0.270827
Target:  5'- cGCCGcagcucgagGCCCUgauAGCGGCCCUuCGGcGGCa -3'
miRNA:   3'- -CGGCa--------CGGGG---UCGCCGGGGcGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 169531 0.74 0.182004
Target:  5'- uGCUgGUGCCCCAGgGGCCCgUGCcGcGGCc -3'
miRNA:   3'- -CGG-CACGGGGUCgCCGGG-GCGuC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 168829 0.73 0.203719
Target:  5'- aGCUGgGCCCCAGCGaGCUgCGCGucacggacgccGGGCu -3'
miRNA:   3'- -CGGCaCGGGGUCGC-CGGgGCGU-----------CCCG- -5'
14286 3' -66.9 NC_003521.1 + 166474 0.7 0.33376
Target:  5'- gGCCGUaGCCgCgCAGCaGCgCCauccaGCGGGGCg -3'
miRNA:   3'- -CGGCA-CGG-G-GUCGcCG-GGg----CGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 166262 0.66 0.550915
Target:  5'- gGCCGUGCUCacgggcacgcgcaCGGCgcggcugguccgcguGGCCUCguugcguacggccaGCAGGGCg -3'
miRNA:   3'- -CGGCACGGG-------------GUCG---------------CCGGGG--------------CGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 165878 0.71 0.288645
Target:  5'- uGCaCGUGCUCgGGCGGCggguacaccacCCCGCGcugccGGGCc -3'
miRNA:   3'- -CG-GCACGGGgUCGCCG-----------GGGCGU-----CCCG- -5'
14286 3' -66.9 NC_003521.1 + 164933 0.68 0.42252
Target:  5'- aCCGgGCCCCuccuccGGCGGCUCgCGUcgccggagAGGGCc -3'
miRNA:   3'- cGGCaCGGGG------UCGCCGGG-GCG--------UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 164833 0.66 0.569073
Target:  5'- -aCGUGCUgaCGGC-GCCCgGCgAGGGCc -3'
miRNA:   3'- cgGCACGGg-GUCGcCGGGgCG-UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 164145 0.7 0.313815
Target:  5'- cGCUGUcCCCCAGCGuCCUCGCAGuccGCg -3'
miRNA:   3'- -CGGCAcGGGGUCGCcGGGGCGUCc--CG- -5'
14286 3' -66.9 NC_003521.1 + 163746 0.66 0.515175
Target:  5'- cGCCGgcgGCaaCAGCGGCgCUcacgGCGGcGGCa -3'
miRNA:   3'- -CGGCa--CGggGUCGCCGgGG----CGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 163408 0.69 0.391379
Target:  5'- gGCCGUgGCCCCGucGuCGGCUgCCGCugccuaccAGGGUg -3'
miRNA:   3'- -CGGCA-CGGGGU--C-GCCGG-GGCG--------UCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.