miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 3' -66.9 NC_003521.1 + 212023 0.72 0.243114
Target:  5'- gGCCGUGUgCCaAGUGGCaugagagggCGCGGGGCg -3'
miRNA:   3'- -CGGCACGgGG-UCGCCGgg-------GCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 37469 0.73 0.222676
Target:  5'- cGCgCGgGCCaCC-GUGGUgCCGCAGGGCa -3'
miRNA:   3'- -CG-GCaCGG-GGuCGCCGgGGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 85317 0.73 0.227644
Target:  5'- cGCCGUcGCUCCAgccuuggcccGCGGCCcgCCGCAGGccgGCg -3'
miRNA:   3'- -CGGCA-CGGGGU----------CGCCGG--GGCGUCC---CG- -5'
14286 3' -66.9 NC_003521.1 + 137164 0.73 0.227644
Target:  5'- gGCCGcgGCCgCAGCGGCCgCCGCcGaGCu -3'
miRNA:   3'- -CGGCa-CGGgGUCGCCGG-GGCGuCcCG- -5'
14286 3' -66.9 NC_003521.1 + 67563 0.72 0.232706
Target:  5'- aCUGUGUCaggCGGCgGGCCCCGC-GGGCc -3'
miRNA:   3'- cGGCACGGg--GUCG-CCGGGGCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 91936 0.72 0.232706
Target:  5'- uGCgGUGgaCCCGGCGGCggacCCCGUGGcGGCg -3'
miRNA:   3'- -CGgCACg-GGGUCGCCG----GGGCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 120926 0.72 0.232706
Target:  5'- uGCgGcUGCCCgcggCGGCGGCUCCGgcgaGGGGCa -3'
miRNA:   3'- -CGgC-ACGGG----GUCGCCGGGGCg---UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 209532 0.72 0.237862
Target:  5'- cGCCGcUGCCgCGGUuauGcGCCCgGCGGGGUg -3'
miRNA:   3'- -CGGC-ACGGgGUCG---C-CGGGgCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 223172 0.72 0.237862
Target:  5'- cGUgGUGCCCCGGUGcuggcguacguaGCUCCGCAGcGCg -3'
miRNA:   3'- -CGgCACGGGGUCGC------------CGGGGCGUCcCG- -5'
14286 3' -66.9 NC_003521.1 + 196757 0.73 0.213016
Target:  5'- aCCGUcugcuGCCCCGGcCGGCgcgaCCGCGGGcGCg -3'
miRNA:   3'- cGGCA-----CGGGGUC-GCCGg---GGCGUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 75534 0.73 0.208323
Target:  5'- aGCUGUGUCaguuCAGCGGCgCCgGCGGcGGCu -3'
miRNA:   3'- -CGGCACGGg---GUCGCCG-GGgCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 233405 0.73 0.199203
Target:  5'- uGCCGUcucggcuccugGCCCCGGUGGCUCCGac-GGCc -3'
miRNA:   3'- -CGGCA-----------CGGGGUCGCCGGGGCgucCCG- -5'
14286 3' -66.9 NC_003521.1 + 139383 0.78 0.094604
Target:  5'- cGCCGUGCUCU--UGGCCCCGCGGuGGUc -3'
miRNA:   3'- -CGGCACGGGGucGCCGGGGCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 112855 0.78 0.101625
Target:  5'- gGCCGagcUGCCCCAGCuGCuCCCGCGGcuGGCc -3'
miRNA:   3'- -CGGC---ACGGGGUCGcCG-GGGCGUC--CCG- -5'
14286 3' -66.9 NC_003521.1 + 160773 0.78 0.106575
Target:  5'- cGCgCGUGCCgCCGGCGGCa-CGCGGGcGCg -3'
miRNA:   3'- -CG-GCACGG-GGUCGCCGggGCGUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 77707 0.77 0.123976
Target:  5'- aGCCGUGgCggcguuguuggcgaCGGCGGCCUCGguGGGCg -3'
miRNA:   3'- -CGGCACgGg-------------GUCGCCGGGGCguCCCG- -5'
14286 3' -66.9 NC_003521.1 + 46736 0.76 0.144652
Target:  5'- cUCGUGCCCCAG-GGCCCCcaGCAGcuGGUg -3'
miRNA:   3'- cGGCACGGGGUCgCCGGGG--CGUC--CCG- -5'
14286 3' -66.9 NC_003521.1 + 204026 0.75 0.16998
Target:  5'- cGCCGU-CCgCgAGCGGCUCCGCAGcGCg -3'
miRNA:   3'- -CGGCAcGG-GgUCGCCGGGGCGUCcCG- -5'
14286 3' -66.9 NC_003521.1 + 59614 0.74 0.194775
Target:  5'- gGCgGcgGCCCCGGCGGCgaCCGCGGcucgcaGGCg -3'
miRNA:   3'- -CGgCa-CGGGGUCGCCGg-GGCGUC------CCG- -5'
14286 3' -66.9 NC_003521.1 + 39586 0.73 0.199203
Target:  5'- uGCCG-GCgUCGGCGGUCCUGCccuGGGUg -3'
miRNA:   3'- -CGGCaCGgGGUCGCCGGGGCGu--CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.