miRNA display CGI


Results 61 - 80 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 3' -66.9 NC_003521.1 + 223172 0.72 0.237862
Target:  5'- cGUgGUGCCCCGGUGcuggcguacguaGCUCCGCAGcGCg -3'
miRNA:   3'- -CGgCACGGGGUCGC------------CGGGGCGUCcCG- -5'
14286 3' -66.9 NC_003521.1 + 212023 0.72 0.243114
Target:  5'- gGCCGUGUgCCaAGUGGCaugagagggCGCGGGGCg -3'
miRNA:   3'- -CGGCACGgGG-UCGCCGgg-------GCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 118924 0.71 0.288645
Target:  5'- cGCCGcgGCgUgGGCGGCggcguCCCGuCAGGGCc -3'
miRNA:   3'- -CGGCa-CGgGgUCGCCG-----GGGC-GUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 226845 0.71 0.288645
Target:  5'- cGCCGccGCgCCgGGCaGGCCCauCAGGGCg -3'
miRNA:   3'- -CGGCa-CG-GGgUCG-CCGGGgcGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 88527 0.71 0.294785
Target:  5'- aGCCGUGCaggcgcaCCGaaaCGGCCUCcucgggGCAGGGCa -3'
miRNA:   3'- -CGGCACGg------GGUc--GCCGGGG------CGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 136658 0.71 0.294785
Target:  5'- cGCCGUGCgaCCCGcGCcGCCgCCGCAGaGCa -3'
miRNA:   3'- -CGGCACG--GGGU-CGcCGG-GGCGUCcCG- -5'
14286 3' -66.9 NC_003521.1 + 164145 0.7 0.313815
Target:  5'- cGCUGUcCCCCAGCGuCCUCGCAGuccGCg -3'
miRNA:   3'- -CGGCAcGGGGUCGCcGGGGCGUCc--CG- -5'
14286 3' -66.9 NC_003521.1 + 89722 0.7 0.32701
Target:  5'- cGCCaucCCCCAGCGGCCCgaccCGaGGGGUc -3'
miRNA:   3'- -CGGcacGGGGUCGCCGGG----GCgUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 32904 0.7 0.32768
Target:  5'- cGCCGUGCCCgccgcccccggcguaGGUGGCgCCGgagagcccaAGGGCg -3'
miRNA:   3'- -CGGCACGGGg--------------UCGCCGgGGCg--------UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 92103 0.7 0.33376
Target:  5'- gGCgGUGCCCCGGguCGGaaCCCC-CGGGuGCg -3'
miRNA:   3'- -CGgCACGGGGUC--GCC--GGGGcGUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 72983 0.71 0.288645
Target:  5'- aGCCGacgaGCCCgCGGCGGUcgugCCCGgGGGGg -3'
miRNA:   3'- -CGGCa---CGGG-GUCGCCG----GGGCgUCCCg -5'
14286 3' -66.9 NC_003521.1 + 45624 0.71 0.288645
Target:  5'- cGCCGacgcagacgGCCaCCGccGcCGGCUCCGCGGGGUc -3'
miRNA:   3'- -CGGCa--------CGG-GGU--C-GCCGGGGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 4582 0.72 0.253905
Target:  5'- cGCCG-GCCuCCGGUuugcuaacgGGCCgCGCGGGGg -3'
miRNA:   3'- -CGGCaCGG-GGUCG---------CCGGgGCGUCCCg -5'
14286 3' -66.9 NC_003521.1 + 55222 0.72 0.257775
Target:  5'- uCCGUcggcguuuaauacaGCCCCgAGCGGCucgccggcgagCCCGCGGGGg -3'
miRNA:   3'- cGGCA--------------CGGGG-UCGCCG-----------GGGCGUCCCg -5'
14286 3' -66.9 NC_003521.1 + 135363 0.72 0.265088
Target:  5'- cGCCGUcUCCgCGGCGGUuaucgCCCGCGGGcGCc -3'
miRNA:   3'- -CGGCAcGGG-GUCGCCG-----GGGCGUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 186523 0.71 0.276078
Target:  5'- gGCgGUGUCgCCAGCgggGGCUCCgugggagGCAGGGCc -3'
miRNA:   3'- -CGgCACGG-GGUCG---CCGGGG-------CGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 42792 0.71 0.276078
Target:  5'- cCCGUGCagCCCGGCGGCUgcacgcgCCGCAacGGCa -3'
miRNA:   3'- cGGCACG--GGGUCGCCGG-------GGCGUc-CCG- -5'
14286 3' -66.9 NC_003521.1 + 153079 0.71 0.276078
Target:  5'- cGCCGggGCCCgGGCcggGGCCcaccacgCCGCcGGGCg -3'
miRNA:   3'- -CGGCa-CGGGgUCG---CCGG-------GGCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 65715 0.71 0.276666
Target:  5'- aGCgGcGCCgCGGCGGCCCUGgccggcaaaaAGGGCa -3'
miRNA:   3'- -CGgCaCGGgGUCGCCGGGGCg---------UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 165878 0.71 0.288645
Target:  5'- uGCaCGUGCUCgGGCGGCggguacaccacCCCGCGcugccGGGCc -3'
miRNA:   3'- -CG-GCACGGGgUCGCCG-----------GGGCGU-----CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.