miRNA display CGI


Results 1 - 20 of 289 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 3' -66.9 NC_003521.1 + 6047 1.12 0.000348
Target:  5'- aGCCGUGCCCCAGCGGCCCCGCAGGGCg -3'
miRNA:   3'- -CGGCACGGGGUCGCCGGGGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 34644 0.72 0.259448
Target:  5'- uGCuCGcgGCCCUGGCcGCCCUGCuccuGGGCu -3'
miRNA:   3'- -CG-GCa-CGGGGUCGcCGGGGCGu---CCCG- -5'
14286 3' -66.9 NC_003521.1 + 170691 0.71 0.270827
Target:  5'- cGCCGcagcucgagGCCCUgauAGCGGCCCUuCGGcGGCa -3'
miRNA:   3'- -CGGCa--------CGGGG---UCGCCGGGGcGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 67533 0.66 0.569073
Target:  5'- cCCGUaagaCCCAGCGGCCCUuCAaGGUu -3'
miRNA:   3'- cGGCAcg--GGGUCGCCGGGGcGUcCCG- -5'
14286 3' -66.9 NC_003521.1 + 122626 0.75 0.147362
Target:  5'- gGCCGcGCgCUCGGCGGCCCCGacuuugccggcGGGCg -3'
miRNA:   3'- -CGGCaCG-GGGUCGCCGGGGCgu---------CCCG- -5'
14286 3' -66.9 NC_003521.1 + 169531 0.74 0.182004
Target:  5'- uGCUgGUGCCCCAGgGGCCCgUGCcGcGGCc -3'
miRNA:   3'- -CGG-CACGGGGUCgCCGGG-GCGuC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 88465 0.72 0.232706
Target:  5'- cGCC--GCCCCGGcCGGCCCCagaGCAGcgucGGCg -3'
miRNA:   3'- -CGGcaCGGGGUC-GCCGGGG---CGUC----CCG- -5'
14286 3' -66.9 NC_003521.1 + 149570 0.72 0.243114
Target:  5'- -gCGUGUCCCGGaCGGgaCCCCG-AGGGCc -3'
miRNA:   3'- cgGCACGGGGUC-GCC--GGGGCgUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 174718 0.72 0.248461
Target:  5'- -aCG-GCCUCcuggauaaagagGGCGGCCCaaCGCAGGGCu -3'
miRNA:   3'- cgGCaCGGGG------------UCGCCGGG--GCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 36692 0.72 0.258889
Target:  5'- gGCCGgGCUCCGGCgccuGGCCCgagcagguggaggCGCAGuGGCg -3'
miRNA:   3'- -CGGCaCGGGGUCG----CCGGG-------------GCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 235102 0.72 0.249001
Target:  5'- cGCCGUGCCCgGGCcguacacauaaccccGGugacggcgcccguuCCCCGCGgacGGGCg -3'
miRNA:   3'- -CGGCACGGGgUCG---------------CC--------------GGGGCGU---CCCG- -5'
14286 3' -66.9 NC_003521.1 + 90295 0.72 0.243114
Target:  5'- cGCCG-GaCCCCA-CGGCUCCcgcuccuaGCAGGGCc -3'
miRNA:   3'- -CGGCaC-GGGGUcGCCGGGG--------CGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 14466 0.8 0.070868
Target:  5'- aGCCGccGCUCCcGCGGCgcuaCCCGCGGGGCg -3'
miRNA:   3'- -CGGCa-CGGGGuCGCCG----GGGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 161480 0.72 0.253905
Target:  5'- gGCCGUGUCCUuugcGCGaGaCCCUGguGGGUc -3'
miRNA:   3'- -CGGCACGGGGu---CGC-C-GGGGCguCCCG- -5'
14286 3' -66.9 NC_003521.1 + 36393 0.76 0.138074
Target:  5'- uCCGUGCUgCUGGCGGCagCGCGGGGCg -3'
miRNA:   3'- cGGCACGG-GGUCGCCGggGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 17424 0.72 0.243114
Target:  5'- cGCCGggGCgCCAcaCGGCCCgCGuCGGGGCg -3'
miRNA:   3'- -CGGCa-CGgGGUc-GCCGGG-GC-GUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 224244 0.72 0.253905
Target:  5'- uCCGUccuCCCCGGUcGCCUCGCAGGcGCa -3'
miRNA:   3'- cGGCAc--GGGGUCGcCGGGGCGUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 223333 0.71 0.270827
Target:  5'- cGCCGUGa-CCGGCGGCgCCGCuaccGGuGCc -3'
miRNA:   3'- -CGGCACggGGUCGCCGgGGCGu---CC-CG- -5'
14286 3' -66.9 NC_003521.1 + 186297 0.76 0.141328
Target:  5'- cGCCGgGCCCCAGCGGCgCCgUGCAGauccuGGUc -3'
miRNA:   3'- -CGGCaCGGGGUCGCCG-GG-GCGUC-----CCG- -5'
14286 3' -66.9 NC_003521.1 + 168829 0.73 0.203719
Target:  5'- aGCUGgGCCCCAGCGaGCUgCGCGucacggacgccGGGCu -3'
miRNA:   3'- -CGGCaCGGGGUCGC-CGGgGCGU-----------CCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.