miRNA display CGI


Results 21 - 40 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 3' -66.9 NC_003521.1 + 103584 0.71 0.276666
Target:  5'- cGCCGUcgGCCCCGGcCGG-UgCGCGGGGg -3'
miRNA:   3'- -CGGCA--CGGGGUC-GCCgGgGCGUCCCg -5'
14286 3' -66.9 NC_003521.1 + 170691 0.71 0.270827
Target:  5'- cGCCGcagcucgagGCCCUgauAGCGGCCCUuCGGcGGCa -3'
miRNA:   3'- -CGGCa--------CGGGG---UCGCCGGGGcGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 90295 0.72 0.243114
Target:  5'- cGCCG-GaCCCCA-CGGCUCCcgcuccuaGCAGGGCc -3'
miRNA:   3'- -CGGCaC-GGGGUcGCCGGGG--------CGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 186297 0.76 0.141328
Target:  5'- cGCCGgGCCCCAGCGGCgCCgUGCAGauccuGGUc -3'
miRNA:   3'- -CGGCaCGGGGUCGCCG-GG-GCGUC-----CCG- -5'
14286 3' -66.9 NC_003521.1 + 120046 0.7 0.347565
Target:  5'- gGCCGUguucaccugGCCCCAGUGGCaggCCgGCAuccaGGCg -3'
miRNA:   3'- -CGGCA---------CGGGGUCGCCG---GGgCGUc---CCG- -5'
14286 3' -66.9 NC_003521.1 + 94928 0.7 0.320361
Target:  5'- cGCCGcugcucccGCCgCCGGCGGCCUCGUcgucGGCg -3'
miRNA:   3'- -CGGCa-------CGG-GGUCGCCGGGGCGuc--CCG- -5'
14286 3' -66.9 NC_003521.1 + 34644 0.72 0.259448
Target:  5'- uGCuCGcgGCCCUGGCcGCCCUGCuccuGGGCu -3'
miRNA:   3'- -CG-GCa-CGGGGUCGcCGGGGCGu---CCCG- -5'
14286 3' -66.9 NC_003521.1 + 36393 0.76 0.138074
Target:  5'- uCCGUGCUgCUGGCGGCagCGCGGGGCg -3'
miRNA:   3'- cGGCACGG-GGUCGCCGggGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 128351 0.7 0.320361
Target:  5'- uGCCGaaGUa--GGUGGCCCCGCcGGGCg -3'
miRNA:   3'- -CGGCa-CGgggUCGCCGGGGCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 14466 0.8 0.070868
Target:  5'- aGCCGccGCUCCcGCGGCgcuaCCCGCGGGGCg -3'
miRNA:   3'- -CGGCa-CGGGGuCGCCG----GGGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 223333 0.71 0.270827
Target:  5'- cGCCGUGa-CCGGCGGCgCCGCuaccGGuGCc -3'
miRNA:   3'- -CGGCACggGGUCGCCGgGGCGu---CC-CG- -5'
14286 3' -66.9 NC_003521.1 + 74564 0.71 0.282605
Target:  5'- uGCgCGUGCCCguGagcaCGGCCCgcuCGCcGGGCg -3'
miRNA:   3'- -CG-GCACGGGguC----GCCGGG---GCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 161480 0.72 0.253905
Target:  5'- gGCCGUGUCCUuugcGCGaGaCCCUGguGGGUc -3'
miRNA:   3'- -CGGCACGGGGu---CGC-C-GGGGCguCCCG- -5'
14286 3' -66.9 NC_003521.1 + 174718 0.72 0.248461
Target:  5'- -aCG-GCCUCcuggauaaagagGGCGGCCCaaCGCAGGGCu -3'
miRNA:   3'- cgGCaCGGGG------------UCGCCGGG--GCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 88465 0.72 0.232706
Target:  5'- cGCC--GCCCCGGcCGGCCCCagaGCAGcgucGGCg -3'
miRNA:   3'- -CGGcaCGGGGUC-GCCGGGG---CGUC----CCG- -5'
14286 3' -66.9 NC_003521.1 + 122626 0.75 0.147362
Target:  5'- gGCCGcGCgCUCGGCGGCCCCGacuuugccggcGGGCg -3'
miRNA:   3'- -CGGCaCG-GGGUCGCCGGGGCgu---------CCCG- -5'
14286 3' -66.9 NC_003521.1 + 182049 0.69 0.361772
Target:  5'- cGCCGgcgcgcgccGCCCUgcAGUGGCuggaccucagCCCGCAGuGGCu -3'
miRNA:   3'- -CGGCa--------CGGGG--UCGCCG----------GGGCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 90502 0.69 0.354618
Target:  5'- gGCCGUGUCCCgAGCGuCCgUCGUAGaGGUa -3'
miRNA:   3'- -CGGCACGGGG-UCGCcGG-GGCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 209251 0.7 0.32701
Target:  5'- uCCGUGCC--AGCGuGUCCCGCGaccuGGGCu -3'
miRNA:   3'- cGGCACGGggUCGC-CGGGGCGU----CCCG- -5'
14286 3' -66.9 NC_003521.1 + 121902 0.7 0.320361
Target:  5'- cGCCGccGCCCaCGccGCGGCgCCGacgAGGGCg -3'
miRNA:   3'- -CGGCa-CGGG-GU--CGCCGgGGCg--UCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.