miRNA display CGI


Results 41 - 60 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 3' -66.9 NC_003521.1 + 196976 0.7 0.340612
Target:  5'- gGCCGgggcGCCUguGaCGGgCCCGCGGccGGCg -3'
miRNA:   3'- -CGGCa---CGGGguC-GCCgGGGCGUC--CCG- -5'
14286 3' -66.9 NC_003521.1 + 34644 0.72 0.259448
Target:  5'- uGCuCGcgGCCCUGGCcGCCCUGCuccuGGGCu -3'
miRNA:   3'- -CG-GCa-CGGGGUCGcCGGGGCGu---CCCG- -5'
14286 3' -66.9 NC_003521.1 + 36393 0.76 0.138074
Target:  5'- uCCGUGCUgCUGGCGGCagCGCGGGGCg -3'
miRNA:   3'- cGGCACGG-GGUCGCCGggGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 120530 0.7 0.33376
Target:  5'- cCCGgggaaggGCCCUcggcggccGGCGGUCCCGgGGGaGCg -3'
miRNA:   3'- cGGCa------CGGGG--------UCGCCGGGGCgUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 14466 0.8 0.070868
Target:  5'- aGCCGccGCUCCcGCGGCgcuaCCCGCGGGGCg -3'
miRNA:   3'- -CGGCa-CGGGGuCGCCG----GGGCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 39780 0.68 0.430535
Target:  5'- uCCGggcUGUUCCAGaaguugaGGCUCgGCGGGGCg -3'
miRNA:   3'- cGGC---ACGGGGUCg------CCGGGgCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 122626 0.75 0.147362
Target:  5'- gGCCGcGCgCUCGGCGGCCCCGacuuugccggcGGGCg -3'
miRNA:   3'- -CGGCaCG-GGGUCGCCGGGGCgu---------CCCG- -5'
14286 3' -66.9 NC_003521.1 + 34256 0.68 0.430535
Target:  5'- uGUCGUGCCCCGucGCccuaucGUCCUGUcacgGGGGCg -3'
miRNA:   3'- -CGGCACGGGGU--CGc-----CGGGGCG----UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 17808 0.68 0.414595
Target:  5'- gGCCGUGCgaCCGGCGGacgacgacccCCaCCGCcauaccaaguGGGCg -3'
miRNA:   3'- -CGGCACGg-GGUCGCC----------GG-GGCGu---------CCCG- -5'
14286 3' -66.9 NC_003521.1 + 87719 0.69 0.391379
Target:  5'- uGCCGUcgcgcGCgCCCGGCGG-CgUGguGGGCc -3'
miRNA:   3'- -CGGCA-----CG-GGGUCGCCgGgGCguCCCG- -5'
14286 3' -66.9 NC_003521.1 + 178982 0.69 0.376379
Target:  5'- cGCCGcgGUUCC-GCGGCgCCCuccCAGGGCc -3'
miRNA:   3'- -CGGCa-CGGGGuCGCCG-GGGc--GUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 182049 0.69 0.361772
Target:  5'- cGCCGgcgcgcgccGCCCUgcAGUGGCuggaccucagCCCGCAGuGGCu -3'
miRNA:   3'- -CGGCa--------CGGGG--UCGCCG----------GGGCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 90502 0.69 0.354618
Target:  5'- gGCCGUGUCCCgAGCGuCCgUCGUAGaGGUa -3'
miRNA:   3'- -CGGCACGGGG-UCGCcGG-GGCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 103480 0.7 0.323009
Target:  5'- gGgCG-GCUCCAGCGGgCCCGCgugauaggugaacucGGGGUc -3'
miRNA:   3'- -CgGCaCGGGGUCGCCgGGGCG---------------UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 128351 0.7 0.320361
Target:  5'- uGCCGaaGUa--GGUGGCCCCGCcGGGCg -3'
miRNA:   3'- -CGGCa-CGgggUCGCCGGGGCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 103584 0.71 0.276666
Target:  5'- cGCCGUcgGCCCCGGcCGG-UgCGCGGGGg -3'
miRNA:   3'- -CGGCA--CGGGGUC-GCCgGgGCGUCCCg -5'
14286 3' -66.9 NC_003521.1 + 170691 0.71 0.270827
Target:  5'- cGCCGcagcucgagGCCCUgauAGCGGCCCUuCGGcGGCa -3'
miRNA:   3'- -CGGCa--------CGGGG---UCGCCGGGGcGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 161480 0.72 0.253905
Target:  5'- gGCCGUGUCCUuugcGCGaGaCCCUGguGGGUc -3'
miRNA:   3'- -CGGCACGGGGu---CGC-C-GGGGCguCCCG- -5'
14286 3' -66.9 NC_003521.1 + 174718 0.72 0.248461
Target:  5'- -aCG-GCCUCcuggauaaagagGGCGGCCCaaCGCAGGGCu -3'
miRNA:   3'- cgGCaCGGGG------------UCGCCGGG--GCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 88465 0.72 0.232706
Target:  5'- cGCC--GCCCCGGcCGGCCCCagaGCAGcgucGGCg -3'
miRNA:   3'- -CGGcaCGGGGUC-GCCGGGG---CGUC----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.