miRNA display CGI


Results 61 - 80 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 3' -66.9 NC_003521.1 + 90502 0.69 0.354618
Target:  5'- gGCCGUGUCCCgAGCGuCCgUCGUAGaGGUa -3'
miRNA:   3'- -CGGCACGGGG-UCGCcGG-GGCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 13940 0.69 0.369026
Target:  5'- cGCCGUgguGCCCCcgcAGCuGCCCuCGCuGGaGCc -3'
miRNA:   3'- -CGGCA---CGGGG---UCGcCGGG-GCGuCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 169531 0.74 0.182004
Target:  5'- uGCUgGUGCCCCAGgGGCCCgUGCcGcGGCc -3'
miRNA:   3'- -CGG-CACGGGGUCgCCGGG-GCGuC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 149570 0.72 0.243114
Target:  5'- -gCGUGUCCCGGaCGGgaCCCCG-AGGGCc -3'
miRNA:   3'- cgGCACGGGGUC-GCC--GGGGCgUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 152162 0.72 0.248461
Target:  5'- cGCCG-GCCCaccgaccuGGCGGCCCucugcgccuCGCuGGGCu -3'
miRNA:   3'- -CGGCaCGGGg-------UCGCCGGG---------GCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 224244 0.72 0.253905
Target:  5'- uCCGUccuCCCCGGUcGCCUCGCAGGcGCa -3'
miRNA:   3'- cGGCAc--GGGGUCGcCGGGGCGUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 120089 0.71 0.276666
Target:  5'- cGCCaccugGUGCCCCuGGUGGCCaCGgucCAGGGCc -3'
miRNA:   3'- -CGG-----CACGGGG-UCGCCGGgGC---GUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 74564 0.71 0.282605
Target:  5'- uGCgCGUGCCCguGagcaCGGCCCgcuCGCcGGGCg -3'
miRNA:   3'- -CG-GCACGGGguC----GCCGGG---GCGuCCCG- -5'
14286 3' -66.9 NC_003521.1 + 94928 0.7 0.320361
Target:  5'- cGCCGcugcucccGCCgCCGGCGGCCUCGUcgucGGCg -3'
miRNA:   3'- -CGGCa-------CGG-GGUCGCCGGGGCGuc--CCG- -5'
14286 3' -66.9 NC_003521.1 + 74738 0.7 0.32701
Target:  5'- uGCCGgcccGCUCCcGCuauGGCCCUGCGGGaGUg -3'
miRNA:   3'- -CGGCa---CGGGGuCG---CCGGGGCGUCC-CG- -5'
14286 3' -66.9 NC_003521.1 + 16012 0.67 0.471897
Target:  5'- aGCCGcagacGCCCUAcgccacGCGcGUCCCGCAcgacguggugcGGGCg -3'
miRNA:   3'- -CGGCa----CGGGGU------CGC-CGGGGCGU-----------CCCG- -5'
14286 3' -66.9 NC_003521.1 + 212493 0.67 0.46346
Target:  5'- aUCG-GCCaCCGGCGGUCC-GCAGGccGCg -3'
miRNA:   3'- cGGCaCGG-GGUCGCCGGGgCGUCC--CG- -5'
14286 3' -66.9 NC_003521.1 + 163408 0.69 0.391379
Target:  5'- gGCCGUgGCCCCGucGuCGGCUgCCGCugccuaccAGGGUg -3'
miRNA:   3'- -CGGCA-CGGGGU--C-GCCGG-GGCG--------UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 194379 0.69 0.391379
Target:  5'- gGCCGaccaGCCCCcGCaGCCCCGCcGGa- -3'
miRNA:   3'- -CGGCa---CGGGGuCGcCGGGGCGuCCcg -5'
14286 3' -66.9 NC_003521.1 + 34256 0.68 0.430535
Target:  5'- uGUCGUGCCCCGucGCccuaucGUCCUGUcacgGGGGCg -3'
miRNA:   3'- -CGGCACGGGGU--CGc-----CGGGGCG----UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 39780 0.68 0.430535
Target:  5'- uCCGggcUGUUCCAGaaguugaGGCUCgGCGGGGCg -3'
miRNA:   3'- cGGC---ACGGGGUCg------CCGGGgCGUCCCG- -5'
14286 3' -66.9 NC_003521.1 + 212157 0.68 0.438639
Target:  5'- gGCCGUGUCCauguGcCGcGCCuuGCccAGGGCc -3'
miRNA:   3'- -CGGCACGGGgu--C-GC-CGGggCG--UCCCG- -5'
14286 3' -66.9 NC_003521.1 + 14437 0.68 0.446829
Target:  5'- cGUgGUGCa-CA-CGGCCCUGCGGcGGCg -3'
miRNA:   3'- -CGgCACGggGUcGCCGGGGCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 96917 0.68 0.455104
Target:  5'- cGCCGUGCCCgucuccuggaaUA-CGGCCaCGCAGcGGUc -3'
miRNA:   3'- -CGGCACGGG-----------GUcGCCGGgGCGUC-CCG- -5'
14286 3' -66.9 NC_003521.1 + 18904 0.68 0.455104
Target:  5'- cGCCGcggcaGCCCCgaagGGUGGCgCCGCGcgccGGCa -3'
miRNA:   3'- -CGGCa----CGGGG----UCGCCGgGGCGUc---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.