miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 5' -56.6 NC_003521.1 + 164740 0.66 0.945304
Target:  5'- cCAGCgCGggagGGGGGCAUC-GCGGUCg -3'
miRNA:   3'- -GUCG-GCaacgUCUCCGUGGuUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 130001 0.66 0.945304
Target:  5'- -cGCCG--GCGGcGGCGCgCAACGGcCg -3'
miRNA:   3'- guCGGCaaCGUCuCCGUG-GUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 127070 0.66 0.945304
Target:  5'- -uGCCGcgGCAGGGcCACCGACGa-- -3'
miRNA:   3'- guCGGCaaCGUCUCcGUGGUUGCcag -5'
14286 5' -56.6 NC_003521.1 + 52669 0.66 0.945304
Target:  5'- gAGCgGcaGCAGcGGCACCGGCaGcGUCg -3'
miRNA:   3'- gUCGgCaaCGUCuCCGUGGUUG-C-CAG- -5'
14286 5' -56.6 NC_003521.1 + 196039 0.66 0.945304
Target:  5'- gCAGCagGUUGUAGA-GCACCgGGCGGa- -3'
miRNA:   3'- -GUCGg-CAACGUCUcCGUGG-UUGCCag -5'
14286 5' -56.6 NC_003521.1 + 148417 0.66 0.940875
Target:  5'- gAGCCauggUGCGGGcGGCcgcGCCGGCGGcUCc -3'
miRNA:   3'- gUCGGca--ACGUCU-CCG---UGGUUGCC-AG- -5'
14286 5' -56.6 NC_003521.1 + 98877 0.66 0.940875
Target:  5'- -cGCCGcucgUGCuaGGGGGCGCCGucgucGCGG-Cg -3'
miRNA:   3'- guCGGCa---ACG--UCUCCGUGGU-----UGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 89971 0.66 0.940875
Target:  5'- gCGGCCGUU-CGG-GGUucaACCGGCGGg- -3'
miRNA:   3'- -GUCGGCAAcGUCuCCG---UGGUUGCCag -5'
14286 5' -56.6 NC_003521.1 + 192452 0.66 0.940875
Target:  5'- gGGCaug-GCGGcGGCGCCGguuuccaggacgGCGGUCg -3'
miRNA:   3'- gUCGgcaaCGUCuCCGUGGU------------UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 197173 0.66 0.940875
Target:  5'- gGGCCuGgcaggGCuGGAGGCGgUGGCGGUCc -3'
miRNA:   3'- gUCGG-Caa---CG-UCUCCGUgGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 114102 0.66 0.940875
Target:  5'- aCGGCUGcugUGCGGugacGGCGCCcaagaucAUGGUCg -3'
miRNA:   3'- -GUCGGCa--ACGUCu---CCGUGGu------UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 37458 0.66 0.940875
Target:  5'- gCGGCgGUuucUGCGGAGGCGuguguggacGCGGUCu -3'
miRNA:   3'- -GUCGgCA---ACGUCUCCGUggu------UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 68807 0.66 0.940875
Target:  5'- -cGCCGUccggauagacuUGCGGGcccuGGCACaguCGGUCa -3'
miRNA:   3'- guCGGCA-----------ACGUCU----CCGUGguuGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 225055 0.66 0.939502
Target:  5'- -cGCCGcguagaacgacguuUUGCAGAaccauuccaGGCGCCGAUGG-Ca -3'
miRNA:   3'- guCGGC--------------AACGUCU---------CCGUGGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 103631 0.66 0.93622
Target:  5'- cCGGCCGccgacuccaGCGGGGGCAgcUCGGCGG-Cg -3'
miRNA:   3'- -GUCGGCaa-------CGUCUCCGU--GGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 33640 0.66 0.93622
Target:  5'- aGGCCG-UGgAGGGGCgGCCAgcagaGCGGg- -3'
miRNA:   3'- gUCGGCaACgUCUCCG-UGGU-----UGCCag -5'
14286 5' -56.6 NC_003521.1 + 40276 0.66 0.93622
Target:  5'- uGGCCGuUUGCAcgccuGGGGaCGCCAGacCGGUg -3'
miRNA:   3'- gUCGGC-AACGU-----CUCC-GUGGUU--GCCAg -5'
14286 5' -56.6 NC_003521.1 + 201173 0.66 0.93622
Target:  5'- cCAGCCGagccaUGCGcaaguGGGCgcaacgagagGCCGGCGGUCu -3'
miRNA:   3'- -GUCGGCa----ACGUc----UCCG----------UGGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 168539 0.66 0.93622
Target:  5'- gCGGCCagcgcgGCGGcGGCGCUGGCGGg- -3'
miRNA:   3'- -GUCGGcaa---CGUCuCCGUGGUUGCCag -5'
14286 5' -56.6 NC_003521.1 + 53354 0.66 0.93622
Target:  5'- cCGGCgCGgcgGCGGAGGgGCCGACa--- -3'
miRNA:   3'- -GUCG-GCaa-CGUCUCCgUGGUUGccag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.