miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 5' -56.6 NC_003521.1 + 125100 0.66 0.920891
Target:  5'- gCAGgCGcUGCGGgauGGGCACC-ACGGcCg -3'
miRNA:   3'- -GUCgGCaACGUC---UCCGUGGuUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 75533 0.66 0.920891
Target:  5'- gAGCUGUgucaguuCAGcGGCGCCGGCGG-Cg -3'
miRNA:   3'- gUCGGCAac-----GUCuCCGUGGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 98454 0.66 0.931338
Target:  5'- gGGCuaCGUUGgaGGAGGCGgCGGCGGcCg -3'
miRNA:   3'- gUCG--GCAACg-UCUCCGUgGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 49836 0.66 0.926229
Target:  5'- -cGCCG-UGCAGAcGGCcguCCAggugGCGGUg -3'
miRNA:   3'- guCGGCaACGUCU-CCGu--GGU----UGCCAg -5'
14286 5' -56.6 NC_003521.1 + 136870 0.66 0.931338
Target:  5'- aCGGaCuCGcgGCGGGuGGCGCCGguguucGCGGUCg -3'
miRNA:   3'- -GUC-G-GCaaCGUCU-CCGUGGU------UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 6722 0.66 0.93622
Target:  5'- -cGCCGUggUGCAG-GGCcugacgcaGCCAGCGcUCg -3'
miRNA:   3'- guCGGCA--ACGUCuCCG--------UGGUUGCcAG- -5'
14286 5' -56.6 NC_003521.1 + 53354 0.66 0.93622
Target:  5'- cCGGCgCGgcgGCGGAGGgGCCGACa--- -3'
miRNA:   3'- -GUCG-GCaa-CGUCUCCgUGGUUGccag -5'
14286 5' -56.6 NC_003521.1 + 98236 0.66 0.931338
Target:  5'- aGGCgGggagGCGGGGGCGgCCAcgGCGGg- -3'
miRNA:   3'- gUCGgCaa--CGUCUCCGU-GGU--UGCCag -5'
14286 5' -56.6 NC_003521.1 + 89971 0.66 0.940875
Target:  5'- gCGGCCGUU-CGG-GGUucaACCGGCGGg- -3'
miRNA:   3'- -GUCGGCAAcGUCuCCG---UGGUUGCCag -5'
14286 5' -56.6 NC_003521.1 + 225055 0.66 0.939502
Target:  5'- -cGCCGcguagaacgacguuUUGCAGAaccauuccaGGCGCCGAUGG-Ca -3'
miRNA:   3'- guCGGC--------------AACGUCU---------CCGUGGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 84637 0.66 0.926229
Target:  5'- uCGGCCa-UGCAGGGGaugUCGugGGUCu -3'
miRNA:   3'- -GUCGGcaACGUCUCCgu-GGUugCCAG- -5'
14286 5' -56.6 NC_003521.1 + 946 0.66 0.93622
Target:  5'- cCAGCCGagccaUGCGcaaguGGGCgcaacgagagGCCGGCGGUCu -3'
miRNA:   3'- -GUCGGCa----ACGUc----UCCG----------UGGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 188040 0.66 0.920345
Target:  5'- uCAGCCGgUGCAGcGGGUugucgauGCC-GCGGUa -3'
miRNA:   3'- -GUCGGCaACGUC-UCCG-------UGGuUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 80070 0.66 0.919246
Target:  5'- --aCCGUUGUugucucugcucaucGGGGGUGCCGACGG-Cg -3'
miRNA:   3'- gucGGCAACG--------------UCUCCGUGGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 58770 0.66 0.919246
Target:  5'- cCAGCCacUGCAGGGcggcgcGCGCCGgcgacgacgcauagACGGUCu -3'
miRNA:   3'- -GUCGGcaACGUCUC------CGUGGU--------------UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 109348 0.66 0.930838
Target:  5'- gCAGCCGgcGCAgGAGGCcgacgagGCCGagagcGCGGcCu -3'
miRNA:   3'- -GUCGGCaaCGU-CUCCG-------UGGU-----UGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 89582 0.66 0.930838
Target:  5'- -cGCCGUcccaggccGCGGAagaagaugaagaaGGCGCC-GCGGUCa -3'
miRNA:   3'- guCGGCAa-------CGUCU-------------CCGUGGuUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 196971 0.66 0.931338
Target:  5'- gAGCCG--GCcGGGGCGCCuguGACGGg- -3'
miRNA:   3'- gUCGGCaaCGuCUCCGUGG---UUGCCag -5'
14286 5' -56.6 NC_003521.1 + 103631 0.66 0.93622
Target:  5'- cCGGCCGccgacuccaGCGGGGGCAgcUCGGCGG-Cg -3'
miRNA:   3'- -GUCGGCaa-------CGUCUCCGU--GGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 196039 0.66 0.945304
Target:  5'- gCAGCagGUUGUAGA-GCACCgGGCGGa- -3'
miRNA:   3'- -GUCGg-CAACGUCUcCGUGG-UUGCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.