miRNA display CGI


Results 41 - 60 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 5' -56.6 NC_003521.1 + 68807 0.66 0.940875
Target:  5'- -cGCCGUccggauagacuUGCGGGcccuGGCACaguCGGUCa -3'
miRNA:   3'- guCGGCA-----------ACGUCU----CCGUGguuGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 164740 0.66 0.945304
Target:  5'- cCAGCgCGggagGGGGGCAUC-GCGGUCg -3'
miRNA:   3'- -GUCG-GCaacgUCUCCGUGGuUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 201173 0.66 0.93622
Target:  5'- cCAGCCGagccaUGCGcaaguGGGCgcaacgagagGCCGGCGGUCu -3'
miRNA:   3'- -GUCGGCa----ACGUc----UCCG----------UGGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 148417 0.66 0.940875
Target:  5'- gAGCCauggUGCGGGcGGCcgcGCCGGCGGcUCc -3'
miRNA:   3'- gUCGGca--ACGUCU-CCG---UGGUUGCC-AG- -5'
14286 5' -56.6 NC_003521.1 + 130001 0.66 0.945304
Target:  5'- -cGCCG--GCGGcGGCGCgCAACGGcCg -3'
miRNA:   3'- guCGGCaaCGUCuCCGUG-GUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 240504 0.67 0.915327
Target:  5'- uGGCCGuUUGCAcgcuGGGGaCGCCAGacCGGUg -3'
miRNA:   3'- gUCGGC-AACGU----CUCC-GUGGUU--GCCAg -5'
14286 5' -56.6 NC_003521.1 + 186597 0.67 0.913613
Target:  5'- gCAGCCGcccgGCAGucGGUacugccggacaccgGCCAgcaGCGGUCg -3'
miRNA:   3'- -GUCGGCaa--CGUCu-CCG--------------UGGU---UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 127411 0.67 0.909535
Target:  5'- uGGUCG-UGCAGcgcguucacguAGGcCGCCAGCGGcUCg -3'
miRNA:   3'- gUCGGCaACGUC-----------UCC-GUGGUUGCC-AG- -5'
14286 5' -56.6 NC_003521.1 + 224012 0.67 0.909535
Target:  5'- gCGGCa---GCGGcGGGC-CCGGCGGUCg -3'
miRNA:   3'- -GUCGgcaaCGUC-UCCGuGGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 222572 0.67 0.903519
Target:  5'- cCAcUCGcaGCAGAGGCGCUGGCGGa- -3'
miRNA:   3'- -GUcGGCaaCGUCUCCGUGGUUGCCag -5'
14286 5' -56.6 NC_003521.1 + 145897 0.67 0.903519
Target:  5'- -cGCCGgcgGCGGGaGCAgCGGCGGUUc -3'
miRNA:   3'- guCGGCaa-CGUCUcCGUgGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 116887 0.67 0.903519
Target:  5'- gCGGCUGcgGCGGc-GCGCCGGCGGg- -3'
miRNA:   3'- -GUCGGCaaCGUCucCGUGGUUGCCag -5'
14286 5' -56.6 NC_003521.1 + 179461 0.67 0.915327
Target:  5'- gAGCUGUUGCAGgaAGcGgGCCGugGG-Ca -3'
miRNA:   3'- gUCGGCAACGUC--UC-CgUGGUugCCaG- -5'
14286 5' -56.6 NC_003521.1 + 229246 0.67 0.915327
Target:  5'- gGGCC---GCGGAGGUGCUuGCGGUg -3'
miRNA:   3'- gUCGGcaaCGUCUCCGUGGuUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 161724 0.67 0.915327
Target:  5'- gAGCgGUUGCGcGAGGUcaucGCCAGCGuGg- -3'
miRNA:   3'- gUCGgCAACGU-CUCCG----UGGUUGC-Cag -5'
14286 5' -56.6 NC_003521.1 + 38302 0.67 0.890821
Target:  5'- gCAGuuGUUGCAggccGAGGCacgGCCAAgGG-Cg -3'
miRNA:   3'- -GUCggCAACGU----CUCCG---UGGUUgCCaG- -5'
14286 5' -56.6 NC_003521.1 + 27515 0.67 0.890821
Target:  5'- gGGgCGUgcgGCccGAGGCGCCcACGGUg -3'
miRNA:   3'- gUCgGCAa--CGu-CUCCGUGGuUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 30897 0.67 0.89728
Target:  5'- gGGCCGagcugaacUGCGGcAGGCGagAGCGGUCc -3'
miRNA:   3'- gUCGGCa-------ACGUC-UCCGUggUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 73132 0.67 0.89728
Target:  5'- -uGCUGcacgGCGGGGGCAgCGGCGG-Cg -3'
miRNA:   3'- guCGGCaa--CGUCUCCGUgGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 71286 0.67 0.903519
Target:  5'- gGGCCGcgGCAcgggccccuGGGGCACCAGCa--- -3'
miRNA:   3'- gUCGGCaaCGU---------CUCCGUGGUUGccag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.