miRNA display CGI


Results 61 - 80 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 5' -56.6 NC_003521.1 + 222042 0.67 0.909535
Target:  5'- gCAGUaucgGCgGGGGGCACCAGCcGUCg -3'
miRNA:   3'- -GUCGgcaaCG-UCUCCGUGGUUGcCAG- -5'
14286 5' -56.6 NC_003521.1 + 161724 0.67 0.915327
Target:  5'- gAGCgGUUGCGcGAGGUcaucGCCAGCGuGg- -3'
miRNA:   3'- gUCGgCAACGU-CUCCG----UGGUUGC-Cag -5'
14286 5' -56.6 NC_003521.1 + 116887 0.67 0.903519
Target:  5'- gCGGCUGcgGCGGc-GCGCCGGCGGg- -3'
miRNA:   3'- -GUCGGCaaCGUCucCGUGGUUGCCag -5'
14286 5' -56.6 NC_003521.1 + 27515 0.67 0.890821
Target:  5'- gGGgCGUgcgGCccGAGGCGCCcACGGUg -3'
miRNA:   3'- gUCgGCAa--CGu-CUCCGUGGuUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 180501 0.67 0.890821
Target:  5'- -uGCCGUUGCccAGAGaGC-CCGugGGg- -3'
miRNA:   3'- guCGGCAACG--UCUC-CGuGGUugCCag -5'
14286 5' -56.6 NC_003521.1 + 30897 0.67 0.89728
Target:  5'- gGGCCGagcugaacUGCGGcAGGCGagAGCGGUCc -3'
miRNA:   3'- gUCGGCa-------ACGUC-UCCGUggUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 38302 0.67 0.890821
Target:  5'- gCAGuuGUUGCAggccGAGGCacgGCCAAgGG-Cg -3'
miRNA:   3'- -GUCggCAACGU----CUCCG---UGGUUgCCaG- -5'
14286 5' -56.6 NC_003521.1 + 73132 0.67 0.89728
Target:  5'- -uGCUGcacgGCGGGGGCAgCGGCGG-Cg -3'
miRNA:   3'- guCGGCaa--CGUCUCCGUgGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 71286 0.67 0.903519
Target:  5'- gGGCCGcgGCAcgggccccuGGGGCACCAGCa--- -3'
miRNA:   3'- gUCGGCaaCGU---------CUCCGUGGUUGccag -5'
14286 5' -56.6 NC_003521.1 + 44070 0.67 0.903519
Target:  5'- cCGGCCGggGCAGcagacggugcAGGCGCCGccgccaccACcGUCg -3'
miRNA:   3'- -GUCGGCaaCGUC----------UCCGUGGU--------UGcCAG- -5'
14286 5' -56.6 NC_003521.1 + 219707 0.68 0.877256
Target:  5'- gGGUCGUcggcaGCGGAGGCA---ACGGUCu -3'
miRNA:   3'- gUCGGCAa----CGUCUCCGUgguUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 125689 0.68 0.884145
Target:  5'- uGGCC-UUGUccgacguaguGGAGaCGCCGGCGGUCa -3'
miRNA:   3'- gUCGGcAACG----------UCUCcGUGGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 129365 0.68 0.85536
Target:  5'- aGGCgGUUGCAGaAGGUGCCGaagAUGGcCu -3'
miRNA:   3'- gUCGgCAACGUC-UCCGUGGU---UGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 234732 0.68 0.855359
Target:  5'- aUAGCCGUgGCGGAacgccgccGCACCGGCcGUCg -3'
miRNA:   3'- -GUCGGCAaCGUCUc-------CGUGGUUGcCAG- -5'
14286 5' -56.6 NC_003521.1 + 186792 0.68 0.877256
Target:  5'- uGGCgGcgGCGGGGGCAagaagcaCGGCGGUUc -3'
miRNA:   3'- gUCGgCaaCGUCUCCGUg------GUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 170247 0.68 0.884145
Target:  5'- aCAGUCGUcGCcuuGGAGGUACUGAUGG-Ca -3'
miRNA:   3'- -GUCGGCAaCG---UCUCCGUGGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 186927 0.68 0.884145
Target:  5'- -cGCCGgugGCGGGGGCGgCGGCGa-- -3'
miRNA:   3'- guCGGCaa-CGUCUCCGUgGUUGCcag -5'
14286 5' -56.6 NC_003521.1 + 224084 0.68 0.884145
Target:  5'- cCGGCgGgcGCGc--GCGCCGGCGGUCg -3'
miRNA:   3'- -GUCGgCaaCGUcucCGUGGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 70179 0.68 0.884145
Target:  5'- cCAcUCGUUGCGGuGGUacACCGGCaGGUCg -3'
miRNA:   3'- -GUcGGCAACGUCuCCG--UGGUUG-CCAG- -5'
14286 5' -56.6 NC_003521.1 + 211156 0.68 0.884145
Target:  5'- cCAGUCGcccauggUGUuuuucGGAGGCGCCGcgcuCGGUCu -3'
miRNA:   3'- -GUCGGCa------ACG-----UCUCCGUGGUu---GCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.