miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 5' -56.6 NC_003521.1 + 6083 1.1 0.003262
Target:  5'- cCAGCCGUUGCAGAGGCACCAACGGUCg -3'
miRNA:   3'- -GUCGGCAACGUCUCCGUGGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 129269 0.83 0.183625
Target:  5'- uCAGCCGcaccucgagGUAGAGGCGCCGGCGGUa -3'
miRNA:   3'- -GUCGGCaa-------CGUCUCCGUGGUUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 197836 0.81 0.250837
Target:  5'- aCGGCCGUcUGCAGgucgucgguGGGCGCCGGCgGGUCg -3'
miRNA:   3'- -GUCGGCA-ACGUC---------UCCGUGGUUG-CCAG- -5'
14286 5' -56.6 NC_003521.1 + 134989 0.77 0.375561
Target:  5'- gCAGCCGguaGCAGGGGCagGCCGugGcGUCg -3'
miRNA:   3'- -GUCGGCaa-CGUCUCCG--UGGUugC-CAG- -5'
14286 5' -56.6 NC_003521.1 + 236486 0.77 0.390943
Target:  5'- -cGCCGgcgGCGGuGGCGCCAggcauggACGGUCg -3'
miRNA:   3'- guCGGCaa-CGUCuCCGUGGU-------UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 100693 0.76 0.443004
Target:  5'- -uGCUGaUGCGGAGGCGCCGccGCGGcCg -3'
miRNA:   3'- guCGGCaACGUCUCCGUGGU--UGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 132357 0.75 0.497812
Target:  5'- gAGCaCGUUGCAG-GGUAUCAGCGG-Ca -3'
miRNA:   3'- gUCG-GCAACGUCuCCGUGGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 110839 0.74 0.535982
Target:  5'- -cGCCGgcGCAGcGGCAgCGACGGUg -3'
miRNA:   3'- guCGGCaaCGUCuCCGUgGUUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 186659 0.74 0.579078
Target:  5'- gCGGCgGUgGCGGAGGCggcggccucuccaacGCCGGCGGUa -3'
miRNA:   3'- -GUCGgCAaCGUCUCCG---------------UGGUUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 161180 0.74 0.539858
Target:  5'- -cGCCGcUGCAgcagcagacgacgccGAGGCGCC-GCGGUCg -3'
miRNA:   3'- guCGGCaACGU---------------CUCCGUGGuUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 18737 0.74 0.575124
Target:  5'- gCGGCgauCGUggcgGCGGuGGCGCCGACgGGUCg -3'
miRNA:   3'- -GUCG---GCAa---CGUCuCCGUGGUUG-CCAG- -5'
14286 5' -56.6 NC_003521.1 + 198269 0.74 0.535982
Target:  5'- aUAGCCGUccCAGcGGCACCAGCaGUCa -3'
miRNA:   3'- -GUCGGCAacGUCuCCGUGGUUGcCAG- -5'
14286 5' -56.6 NC_003521.1 + 115382 0.74 0.545689
Target:  5'- gGGCCGgcaugUGCAG-GGCGCgGGCGGcCg -3'
miRNA:   3'- gUCGGCa----ACGUCuCCGUGgUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 159826 0.74 0.545689
Target:  5'- cCGGCCGUgaggcgcugcGCGGAGGCGCgagcgUAACGGUUg -3'
miRNA:   3'- -GUCGGCAa---------CGUCUCCGUG-----GUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 76699 0.74 0.555453
Target:  5'- gGGuCCGUguaGCGGuGGCACCGGCGG-Cg -3'
miRNA:   3'- gUC-GGCAa--CGUCuCCGUGGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 226884 0.73 0.604904
Target:  5'- gGGCaGcUGCGGGGGCACCAcgGCGGcCa -3'
miRNA:   3'- gUCGgCaACGUCUCCGUGGU--UGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 148559 0.73 0.624865
Target:  5'- cCGGCCGguagcgGCAGcGGCACCcaggGAgGGUCg -3'
miRNA:   3'- -GUCGGCaa----CGUCuCCGUGG----UUgCCAG- -5'
14286 5' -56.6 NC_003521.1 + 172391 0.73 0.59495
Target:  5'- -cGCgGUUG-AGGGGCGCCGGCGGa- -3'
miRNA:   3'- guCGgCAACgUCUCCGUGGUUGCCag -5'
14286 5' -56.6 NC_003521.1 + 26330 0.73 0.58502
Target:  5'- gGGCCGgcucuccaGgGGAGGCuuCCAGCGGUCc -3'
miRNA:   3'- gUCGGCaa------CgUCUCCGu-GGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 100479 0.73 0.614879
Target:  5'- aCGGCCGUUGCuaccgccgccaGGuGGCACCGcgggcgucggACGGUg -3'
miRNA:   3'- -GUCGGCAACG-----------UCuCCGUGGU----------UGCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.