Results 41 - 60 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14286 | 5' | -56.6 | NC_003521.1 | + | 168632 | 0.7 | 0.770902 |
Target: 5'- -uGCUGUUGCuGcuGCGCC-ACGGUCa -3' miRNA: 3'- guCGGCAACGuCucCGUGGuUGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 238955 | 0.7 | 0.770902 |
Target: 5'- cCAGCUGcgGUauuAGAGGCGCCGGgccccguccCGGUCu -3' miRNA: 3'- -GUCGGCaaCG---UCUCCGUGGUU---------GCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 104962 | 0.69 | 0.815104 |
Target: 5'- aGGUCGUgccGCGGGGGCGCC-GCGagacGUCg -3' miRNA: 3'- gUCGGCAa--CGUCUCCGUGGuUGC----CAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 115915 | 0.69 | 0.797843 |
Target: 5'- uCAGCuCGcgGUAGAGGUgagGCCAguACGGUUg -3' miRNA: 3'- -GUCG-GCaaCGUCUCCG---UGGU--UGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 169963 | 0.69 | 0.831732 |
Target: 5'- -cGUCGUUGCucuccuccugGGAGGCGgCGGCGGg- -3' miRNA: 3'- guCGGCAACG----------UCUCCGUgGUUGCCag -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 129667 | 0.69 | 0.823501 |
Target: 5'- gCGGCCGcgcuaUGCGGAccgucccguGGCcCCAGCGGUa -3' miRNA: 3'- -GUCGGCa----ACGUCU---------CCGuGGUUGCCAg -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 212270 | 0.69 | 0.815104 |
Target: 5'- uGGCCGgcgguagGUAGAGGauCAUCAGCGuGUCg -3' miRNA: 3'- gUCGGCaa-----CGUCUCC--GUGGUUGC-CAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 72845 | 0.69 | 0.830917 |
Target: 5'- aCGGCCuGggGCGGcgacgguAGGCA-CGGCGGUCg -3' miRNA: 3'- -GUCGG-CaaCGUC-------UCCGUgGUUGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 172102 | 0.69 | 0.806549 |
Target: 5'- aAGuCCGUgcggGCGGccgacGGCGCC-ACGGUCa -3' miRNA: 3'- gUC-GGCAa---CGUCu----CCGUGGuUGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 116682 | 0.69 | 0.815104 |
Target: 5'- gCAGCgGcgGCGGAGGCAgCGgcGCGGg- -3' miRNA: 3'- -GUCGgCaaCGUCUCCGUgGU--UGCCag -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 91001 | 0.69 | 0.83979 |
Target: 5'- -uGCUGUUGCAGcuGCAgCAGguCGGUCa -3' miRNA: 3'- guCGGCAACGUCucCGUgGUU--GCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 98024 | 0.69 | 0.830917 |
Target: 5'- aGGCUGUUGCcaccaccgccguuGGuGGCACCGACGa-- -3' miRNA: 3'- gUCGGCAACG-------------UCuCCGUGGUUGCcag -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 191696 | 0.69 | 0.831732 |
Target: 5'- aCAGuccCCGcaGCAGcGGCGCC-GCGGUCa -3' miRNA: 3'- -GUC---GGCaaCGUCuCCGUGGuUGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 55917 | 0.69 | 0.83979 |
Target: 5'- aCGGCgGcgGCaacGGGGGUGCCAGCGGg- -3' miRNA: 3'- -GUCGgCaaCG---UCUCCGUGGUUGCCag -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 108221 | 0.69 | 0.83979 |
Target: 5'- aAGCCGUUGCGGA--CGCCGACGc-- -3' miRNA: 3'- gUCGGCAACGUCUccGUGGUUGCcag -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 54290 | 0.69 | 0.838992 |
Target: 5'- aGGCCGUUGCGGcuGGCcacguagAgCAGCGcGUCg -3' miRNA: 3'- gUCGGCAACGUCu-CCG-------UgGUUGC-CAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 170197 | 0.68 | 0.884145 |
Target: 5'- -uGCCGguggagGUAGuGGCACgAGgGGUCg -3' miRNA: 3'- guCGGCaa----CGUCuCCGUGgUUgCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 166639 | 0.68 | 0.85536 |
Target: 5'- gCAGCUGUUGCu--GGUGCCGuagcgACGGUa -3' miRNA: 3'- -GUCGGCAACGucuCCGUGGU-----UGCCAg -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 224084 | 0.68 | 0.884145 |
Target: 5'- cCGGCgGgcGCGc--GCGCCGGCGGUCg -3' miRNA: 3'- -GUCGgCaaCGUcucCGUGGUUGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 240028 | 0.68 | 0.85536 |
Target: 5'- aGGCUcg-GCGG-GGCGCCGgGCGGUCc -3' miRNA: 3'- gUCGGcaaCGUCuCCGUGGU-UGCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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