Results 21 - 40 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14286 | 5' | -56.6 | NC_003521.1 | + | 40740 | 0.72 | 0.634857 |
Target: 5'- gCAGCUGUgUGCuggcGAGGCcaaGCCGGCGGUa -3' miRNA: 3'- -GUCGGCA-ACGu---CUCCG---UGGUUGCCAg -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 6501 | 0.72 | 0.634857 |
Target: 5'- aGGCgGUgacgGCAGAGGCucACCGgugacgaggGCGGUCu -3' miRNA: 3'- gUCGgCAa---CGUCUCCG--UGGU---------UGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 187576 | 0.72 | 0.634857 |
Target: 5'- -cGCCaaGUccGCGGGGGCuucGCCGGCGGUCg -3' miRNA: 3'- guCGG--CAa-CGUCUCCG---UGGUUGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 418 | 0.72 | 0.634857 |
Target: 5'- gCAGCUGUgUGCuggcGAGGCcaaGCCGGCGGUa -3' miRNA: 3'- -GUCGGCA-ACGu---CUCCG---UGGUUGCCAg -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 88525 | 0.72 | 0.654828 |
Target: 5'- gCAGCCG-UGCAGGcGCACCGaaACGGcCu -3' miRNA: 3'- -GUCGGCaACGUCUcCGUGGU--UGCCaG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 118747 | 0.72 | 0.664791 |
Target: 5'- aAGUCGcUGCAGAcGGCAUCGACgugaaGGUCa -3' miRNA: 3'- gUCGGCaACGUCU-CCGUGGUUG-----CCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 172302 | 0.72 | 0.674729 |
Target: 5'- -cGCCGUccggUGuCGGuGGCGCCAGgcCGGUCg -3' miRNA: 3'- guCGGCA----AC-GUCuCCGUGGUU--GCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 125788 | 0.72 | 0.674729 |
Target: 5'- gCAGCCGgccUGC-GAGGC-CCAGgGGUUg -3' miRNA: 3'- -GUCGGCa--ACGuCUCCGuGGUUgCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 16987 | 0.72 | 0.684633 |
Target: 5'- gCAGCCGcaggGaCAGcAGGCGCCcGCGGUg -3' miRNA: 3'- -GUCGGCaa--C-GUC-UCCGUGGuUGCCAg -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 163365 | 0.71 | 0.694497 |
Target: 5'- gCGGCgGcgGCAGugucacGGGCACCAACGG-Cg -3' miRNA: 3'- -GUCGgCaaCGUC------UCCGUGGUUGCCaG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 57476 | 0.71 | 0.714066 |
Target: 5'- gUAGCCGUgGCAGuGGCACUucuugcccauGACGG-Cg -3' miRNA: 3'- -GUCGGCAaCGUCuCCGUGG----------UUGCCaG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 215268 | 0.71 | 0.714066 |
Target: 5'- aCAGCUGgaagggcgagaUGCAGAGGCaggccaccGCCAGCGG-Cg -3' miRNA: 3'- -GUCGGCa----------ACGUCUCCG--------UGGUUGCCaG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 79213 | 0.71 | 0.722789 |
Target: 5'- gCAGCaCGUUGCccgaGGGCACCAgaugcccGCGGUa -3' miRNA: 3'- -GUCG-GCAACGuc--UCCGUGGU-------UGCCAg -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 110760 | 0.71 | 0.723755 |
Target: 5'- cCAGCCGUcgGUAGuAGGCuCCAG-GGUCu -3' miRNA: 3'- -GUCGGCAa-CGUC-UCCGuGGUUgCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 137246 | 0.71 | 0.742899 |
Target: 5'- cCGGCCGggGCcGAcGGCGgCAGCGGg- -3' miRNA: 3'- -GUCGGCaaCGuCU-CCGUgGUUGCCag -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 55976 | 0.71 | 0.742899 |
Target: 5'- -cGCCGaugUGCAGGGGC-CgCAGcCGGUCc -3' miRNA: 3'- guCGGCa--ACGUCUCCGuG-GUU-GCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 51450 | 0.7 | 0.752337 |
Target: 5'- uGGUgGUaGUAGGGGUAgUAGCGGUCa -3' miRNA: 3'- gUCGgCAaCGUCUCCGUgGUUGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 168632 | 0.7 | 0.770902 |
Target: 5'- -uGCUGUUGCuGcuGCGCC-ACGGUCa -3' miRNA: 3'- guCGGCAACGuCucCGUGGuUGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 238955 | 0.7 | 0.770902 |
Target: 5'- cCAGCUGcgGUauuAGAGGCGCCGGgccccguccCGGUCu -3' miRNA: 3'- -GUCGGCaaCG---UCUCCGUGGUU---------GCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 38728 | 0.7 | 0.770902 |
Target: 5'- cCAGCUGcgGUauuAGAGGCGCCGGgccccguccCGGUCu -3' miRNA: 3'- -GUCGGCaaCG---UCUCCGUGGUU---------GCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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