miRNA display CGI


Results 41 - 60 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 5' -56.6 NC_003521.1 + 185725 0.7 0.780011
Target:  5'- -cGCCGggUGCGGAGGUgaucGCCgAGCGGg- -3'
miRNA:   3'- guCGGCa-ACGUCUCCG----UGG-UUGCCag -5'
14286 5' -56.6 NC_003521.1 + 167601 0.7 0.792551
Target:  5'- gAGCgGcgcGCAGAGGCGCCGcaggcgcucgggguCGGUCa -3'
miRNA:   3'- gUCGgCaa-CGUCUCCGUGGUu-------------GCCAG- -5'
14286 5' -56.6 NC_003521.1 + 115915 0.69 0.797843
Target:  5'- uCAGCuCGcgGUAGAGGUgagGCCAguACGGUUg -3'
miRNA:   3'- -GUCG-GCaaCGUCUCCG---UGGU--UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 172102 0.69 0.806549
Target:  5'- aAGuCCGUgcggGCGGccgacGGCGCC-ACGGUCa -3'
miRNA:   3'- gUC-GGCAa---CGUCu----CCGUGGuUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 104962 0.69 0.815104
Target:  5'- aGGUCGUgccGCGGGGGCGCC-GCGagacGUCg -3'
miRNA:   3'- gUCGGCAa--CGUCUCCGUGGuUGC----CAG- -5'
14286 5' -56.6 NC_003521.1 + 116682 0.69 0.815104
Target:  5'- gCAGCgGcgGCGGAGGCAgCGgcGCGGg- -3'
miRNA:   3'- -GUCGgCaaCGUCUCCGUgGU--UGCCag -5'
14286 5' -56.6 NC_003521.1 + 212270 0.69 0.815104
Target:  5'- uGGCCGgcgguagGUAGAGGauCAUCAGCGuGUCg -3'
miRNA:   3'- gUCGGCaa-----CGUCUCC--GUGGUUGC-CAG- -5'
14286 5' -56.6 NC_003521.1 + 129667 0.69 0.823501
Target:  5'- gCGGCCGcgcuaUGCGGAccgucccguGGCcCCAGCGGUa -3'
miRNA:   3'- -GUCGGCa----ACGUCU---------CCGuGGUUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 98024 0.69 0.830917
Target:  5'- aGGCUGUUGCcaccaccgccguuGGuGGCACCGACGa-- -3'
miRNA:   3'- gUCGGCAACG-------------UCuCCGUGGUUGCcag -5'
14286 5' -56.6 NC_003521.1 + 72845 0.69 0.830917
Target:  5'- aCGGCCuGggGCGGcgacgguAGGCA-CGGCGGUCg -3'
miRNA:   3'- -GUCGG-CaaCGUC-------UCCGUgGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 191696 0.69 0.831732
Target:  5'- aCAGuccCCGcaGCAGcGGCGCC-GCGGUCa -3'
miRNA:   3'- -GUC---GGCaaCGUCuCCGUGGuUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 169963 0.69 0.831732
Target:  5'- -cGUCGUUGCucuccuccugGGAGGCGgCGGCGGg- -3'
miRNA:   3'- guCGGCAACG----------UCUCCGUgGUUGCCag -5'
14286 5' -56.6 NC_003521.1 + 54290 0.69 0.838992
Target:  5'- aGGCCGUUGCGGcuGGCcacguagAgCAGCGcGUCg -3'
miRNA:   3'- gUCGGCAACGUCu-CCG-------UgGUUGC-CAG- -5'
14286 5' -56.6 NC_003521.1 + 55917 0.69 0.83979
Target:  5'- aCGGCgGcgGCaacGGGGGUGCCAGCGGg- -3'
miRNA:   3'- -GUCGgCaaCG---UCUCCGUGGUUGCCag -5'
14286 5' -56.6 NC_003521.1 + 108221 0.69 0.83979
Target:  5'- aAGCCGUUGCGGA--CGCCGACGc-- -3'
miRNA:   3'- gUCGGCAACGUCUccGUGGUUGCcag -5'
14286 5' -56.6 NC_003521.1 + 91001 0.69 0.83979
Target:  5'- -uGCUGUUGCAGcuGCAgCAGguCGGUCa -3'
miRNA:   3'- guCGGCAACGUCucCGUgGUU--GCCAG- -5'
14286 5' -56.6 NC_003521.1 + 234732 0.68 0.855359
Target:  5'- aUAGCCGUgGCGGAacgccgccGCACCGGCcGUCg -3'
miRNA:   3'- -GUCGGCAaCGUCUc-------CGUGGUUGcCAG- -5'
14286 5' -56.6 NC_003521.1 + 176377 0.68 0.855359
Target:  5'- uCAGCg--UGCGGAGGUACUcGCGcGUCu -3'
miRNA:   3'- -GUCGgcaACGUCUCCGUGGuUGC-CAG- -5'
14286 5' -56.6 NC_003521.1 + 96647 0.68 0.855359
Target:  5'- cCAGCgCGcgGCAGGcGGCGCCGGCGu-- -3'
miRNA:   3'- -GUCG-GCaaCGUCU-CCGUGGUUGCcag -5'
14286 5' -56.6 NC_003521.1 + 39801 0.68 0.855359
Target:  5'- aGGCUcg-GCGG-GGCGCCGgGCGGUCc -3'
miRNA:   3'- gUCGGcaaCGUCuCCGUGGU-UGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.