Results 61 - 80 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14286 | 5' | -56.6 | NC_003521.1 | + | 166639 | 0.68 | 0.85536 |
Target: 5'- gCAGCUGUUGCu--GGUGCCGuagcgACGGUa -3' miRNA: 3'- -GUCGGCAACGucuCCGUGGU-----UGCCAg -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 129365 | 0.68 | 0.85536 |
Target: 5'- aGGCgGUUGCAGaAGGUGCCGaagAUGGcCu -3' miRNA: 3'- gUCGgCAACGUC-UCCGUGGU---UGCCaG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 240028 | 0.68 | 0.85536 |
Target: 5'- aGGCUcg-GCGG-GGCGCCGgGCGGUCc -3' miRNA: 3'- gUCGGcaaCGUCuCCGUGGU-UGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 150618 | 0.68 | 0.862858 |
Target: 5'- gGGCUGUUGCGGcGGCugCugcgcaGGCGGg- -3' miRNA: 3'- gUCGGCAACGUCuCCGugG------UUGCCag -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 97110 | 0.68 | 0.870159 |
Target: 5'- uCGGCCagcgUGCAGaAGGCG-CGGCGGUa -3' miRNA: 3'- -GUCGGca--ACGUC-UCCGUgGUUGCCAg -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 82813 | 0.68 | 0.870159 |
Target: 5'- aAGCCGacGagaGGAgGGCACCGGCGG-Ca -3' miRNA: 3'- gUCGGCaaCg--UCU-CCGUGGUUGCCaG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 28463 | 0.68 | 0.870159 |
Target: 5'- cCAGCCuuggGCGGu-GCACCAGCGGg- -3' miRNA: 3'- -GUCGGcaa-CGUCucCGUGGUUGCCag -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 77010 | 0.68 | 0.870159 |
Target: 5'- -cGCCGUc-CAGGGGCAgCAuGCGGUUg -3' miRNA: 3'- guCGGCAacGUCUCCGUgGU-UGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 17483 | 0.68 | 0.870159 |
Target: 5'- aCGGCaccgGUAGcGGCGCCGcCGGUCa -3' miRNA: 3'- -GUCGgcaaCGUCuCCGUGGUuGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 186792 | 0.68 | 0.877256 |
Target: 5'- uGGCgGcgGCGGGGGCAagaagcaCGGCGGUUc -3' miRNA: 3'- gUCGgCaaCGUCUCCGUg------GUUGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 219707 | 0.68 | 0.877256 |
Target: 5'- gGGUCGUcggcaGCGGAGGCA---ACGGUCu -3' miRNA: 3'- gUCGGCAa----CGUCUCCGUgguUGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 86333 | 0.68 | 0.877256 |
Target: 5'- uCAGCCGggUGguGAGGCcgugcagcgaGCCGAUGuaGUCc -3' miRNA: 3'- -GUCGGCa-ACguCUCCG----------UGGUUGC--CAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 198076 | 0.68 | 0.877256 |
Target: 5'- aCGGCCGgaUGCguugugGGGGGCGuCUGACGGUg -3' miRNA: 3'- -GUCGGCa-ACG------UCUCCGU-GGUUGCCAg -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 187838 | 0.68 | 0.883465 |
Target: 5'- aGGgCGUUGCGGAcGGCcuuccucACCGccuguugcaugGCGGUCa -3' miRNA: 3'- gUCgGCAACGUCU-CCG-------UGGU-----------UGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 98991 | 0.68 | 0.884145 |
Target: 5'- gAGgCGUcaGgGGAGGUACC-GCGGUCg -3' miRNA: 3'- gUCgGCAa-CgUCUCCGUGGuUGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 170247 | 0.68 | 0.884145 |
Target: 5'- aCAGUCGUcGCcuuGGAGGUACUGAUGG-Ca -3' miRNA: 3'- -GUCGGCAaCG---UCUCCGUGGUUGCCaG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 170197 | 0.68 | 0.884145 |
Target: 5'- -uGCCGguggagGUAGuGGCACgAGgGGUCg -3' miRNA: 3'- guCGGCaa----CGUCuCCGUGgUUgCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 70179 | 0.68 | 0.884145 |
Target: 5'- cCAcUCGUUGCGGuGGUacACCGGCaGGUCg -3' miRNA: 3'- -GUcGGCAACGUCuCCG--UGGUUG-CCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 224084 | 0.68 | 0.884145 |
Target: 5'- cCGGCgGgcGCGc--GCGCCGGCGGUCg -3' miRNA: 3'- -GUCGgCaaCGUcucCGUGGUUGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 211156 | 0.68 | 0.884145 |
Target: 5'- cCAGUCGcccauggUGUuuuucGGAGGCGCCGcgcuCGGUCu -3' miRNA: 3'- -GUCGGCa------ACG-----UCUCCGUGGUu---GCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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