miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 5' -56.6 NC_003521.1 + 53354 0.66 0.93622
Target:  5'- cCGGCgCGgcgGCGGAGGgGCCGACa--- -3'
miRNA:   3'- -GUCG-GCaa-CGUCUCCgUGGUUGccag -5'
14286 5' -56.6 NC_003521.1 + 117043 0.66 0.93622
Target:  5'- aGGCCaGUguuucGCccGAGGCggccgcggaGCCGGCGGUCa -3'
miRNA:   3'- gUCGG-CAa----CGu-CUCCG---------UGGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 6722 0.66 0.93622
Target:  5'- -cGCCGUggUGCAG-GGCcugacgcaGCCAGCGcUCg -3'
miRNA:   3'- guCGGCA--ACGUCuCCG--------UGGUUGCcAG- -5'
14286 5' -56.6 NC_003521.1 + 40276 0.66 0.93622
Target:  5'- uGGCCGuUUGCAcgccuGGGGaCGCCAGacCGGUg -3'
miRNA:   3'- gUCGGC-AACGU-----CUCC-GUGGUU--GCCAg -5'
14286 5' -56.6 NC_003521.1 + 946 0.66 0.93622
Target:  5'- cCAGCCGagccaUGCGcaaguGGGCgcaacgagagGCCGGCGGUCu -3'
miRNA:   3'- -GUCGGCa----ACGUc----UCCG----------UGGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 56264 0.66 0.931338
Target:  5'- aGGCCGgcagGCAGAGGUuggacucgcagGCCAGCa--- -3'
miRNA:   3'- gUCGGCaa--CGUCUCCG-----------UGGUUGccag -5'
14286 5' -56.6 NC_003521.1 + 196971 0.66 0.931338
Target:  5'- gAGCCG--GCcGGGGCGCCuguGACGGg- -3'
miRNA:   3'- gUCGGCaaCGuCUCCGUGG---UUGCCag -5'
14286 5' -56.6 NC_003521.1 + 136870 0.66 0.931338
Target:  5'- aCGGaCuCGcgGCGGGuGGCGCCGguguucGCGGUCg -3'
miRNA:   3'- -GUC-G-GCaaCGUCU-CCGUGGU------UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 98454 0.66 0.931338
Target:  5'- gGGCuaCGUUGgaGGAGGCGgCGGCGGcCg -3'
miRNA:   3'- gUCG--GCAACg-UCUCCGUgGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 98236 0.66 0.931338
Target:  5'- aGGCgGggagGCGGGGGCGgCCAcgGCGGg- -3'
miRNA:   3'- gUCGgCaa--CGUCUCCGU-GGU--UGCCag -5'
14286 5' -56.6 NC_003521.1 + 109348 0.66 0.930838
Target:  5'- gCAGCCGgcGCAgGAGGCcgacgagGCCGagagcGCGGcCu -3'
miRNA:   3'- -GUCGGCaaCGU-CUCCG-------UGGU-----UGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 89582 0.66 0.930838
Target:  5'- -cGCCGUcccaggccGCGGAagaagaugaagaaGGCGCC-GCGGUCa -3'
miRNA:   3'- guCGGCAa-------CGUCU-------------CCGUGGuUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 210747 0.66 0.9283
Target:  5'- aGGCCGUgGCGG-GGCACaugaacaguuccccgCGugGGUUg -3'
miRNA:   3'- gUCGGCAaCGUCuCCGUG---------------GUugCCAG- -5'
14286 5' -56.6 NC_003521.1 + 49836 0.66 0.926229
Target:  5'- -cGCCG-UGCAGAcGGCcguCCAggugGCGGUg -3'
miRNA:   3'- guCGGCaACGUCU-CCGu--GGU----UGCCAg -5'
14286 5' -56.6 NC_003521.1 + 84637 0.66 0.926229
Target:  5'- uCGGCCa-UGCAGGGGaugUCGugGGUCu -3'
miRNA:   3'- -GUCGGcaACGUCUCCgu-GGUugCCAG- -5'
14286 5' -56.6 NC_003521.1 + 57100 0.66 0.926229
Target:  5'- uGGCCGg-GUAGAGGCcCCAGCaGcCg -3'
miRNA:   3'- gUCGGCaaCGUCUCCGuGGUUGcCaG- -5'
14286 5' -56.6 NC_003521.1 + 138696 0.66 0.926229
Target:  5'- aGGCCGUgagccuggGCGGcacGGGCGCUGGCuGGUg -3'
miRNA:   3'- gUCGGCAa-------CGUC---UCCGUGGUUG-CCAg -5'
14286 5' -56.6 NC_003521.1 + 75533 0.66 0.920891
Target:  5'- gAGCUGUgucaguuCAGcGGCGCCGGCGG-Cg -3'
miRNA:   3'- gUCGGCAac-----GUCuCCGUGGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 145599 0.66 0.920891
Target:  5'- gCGGCCGUggccucgcugcUGCAGucGCACC--CGGUg -3'
miRNA:   3'- -GUCGGCA-----------ACGUCucCGUGGuuGCCAg -5'
14286 5' -56.6 NC_003521.1 + 145864 0.66 0.920891
Target:  5'- gGGcCCGgcgGCGGGcGGCGCCGACGa-- -3'
miRNA:   3'- gUC-GGCaa-CGUCU-CCGUGGUUGCcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.