miRNA display CGI


Results 41 - 60 of 152 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 5' -56.6 NC_003521.1 + 125100 0.66 0.920891
Target:  5'- gCAGgCGcUGCGGgauGGGCACC-ACGGcCg -3'
miRNA:   3'- -GUCgGCaACGUC---UCCGUGGuUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 166911 0.66 0.920345
Target:  5'- gGGCaCGggGCAGAGGUagacgggGCCcACGGcCu -3'
miRNA:   3'- gUCG-GCaaCGUCUCCG-------UGGuUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 188040 0.66 0.920345
Target:  5'- uCAGCCGgUGCAGcGGGUugucgauGCC-GCGGUa -3'
miRNA:   3'- -GUCGGCaACGUC-UCCG-------UGGuUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 58770 0.66 0.919246
Target:  5'- cCAGCCacUGCAGGGcggcgcGCGCCGgcgacgacgcauagACGGUCu -3'
miRNA:   3'- -GUCGGcaACGUCUC------CGUGGU--------------UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 80070 0.66 0.919246
Target:  5'- --aCCGUUGUugucucugcucaucGGGGGUGCCGACGG-Cg -3'
miRNA:   3'- gucGGCAACG--------------UCUCCGUGGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 161724 0.67 0.915327
Target:  5'- gAGCgGUUGCGcGAGGUcaucGCCAGCGuGg- -3'
miRNA:   3'- gUCGgCAACGU-CUCCG----UGGUUGC-Cag -5'
14286 5' -56.6 NC_003521.1 + 179461 0.67 0.915327
Target:  5'- gAGCUGUUGCAGgaAGcGgGCCGugGG-Ca -3'
miRNA:   3'- gUCGGCAACGUC--UC-CgUGGUugCCaG- -5'
14286 5' -56.6 NC_003521.1 + 240504 0.67 0.915327
Target:  5'- uGGCCGuUUGCAcgcuGGGGaCGCCAGacCGGUg -3'
miRNA:   3'- gUCGGC-AACGU----CUCC-GUGGUU--GCCAg -5'
14286 5' -56.6 NC_003521.1 + 229246 0.67 0.915327
Target:  5'- gGGCC---GCGGAGGUGCUuGCGGUg -3'
miRNA:   3'- gUCGGcaaCGUCUCCGUGGuUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 38284 0.67 0.913613
Target:  5'- aGGCCGgcgcGCAGcAGGUgcgagagcucgucgGCCAGCGGg- -3'
miRNA:   3'- gUCGGCaa--CGUC-UCCG--------------UGGUUGCCag -5'
14286 5' -56.6 NC_003521.1 + 186597 0.67 0.913613
Target:  5'- gCAGCCGcccgGCAGucGGUacugccggacaccgGCCAgcaGCGGUCg -3'
miRNA:   3'- -GUCGGCaa--CGUCu-CCG--------------UGGU---UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 224012 0.67 0.909535
Target:  5'- gCGGCa---GCGGcGGGC-CCGGCGGUCg -3'
miRNA:   3'- -GUCGgcaaCGUC-UCCGuGGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 127411 0.67 0.909535
Target:  5'- uGGUCG-UGCAGcgcguucacguAGGcCGCCAGCGGcUCg -3'
miRNA:   3'- gUCGGCaACGUC-----------UCC-GUGGUUGCC-AG- -5'
14286 5' -56.6 NC_003521.1 + 222042 0.67 0.909535
Target:  5'- gCAGUaucgGCgGGGGGCACCAGCcGUCg -3'
miRNA:   3'- -GUCGgcaaCG-UCUCCGUGGUUGcCAG- -5'
14286 5' -56.6 NC_003521.1 + 178007 0.67 0.909535
Target:  5'- gGGCgGguagGaCGGAGGCGgCC-ACGGUCg -3'
miRNA:   3'- gUCGgCaa--C-GUCUCCGU-GGuUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 198020 0.67 0.907754
Target:  5'- -uGCCGUUGCGGcgcgugcagccgccGGGCugCA-CGGg- -3'
miRNA:   3'- guCGGCAACGUC--------------UCCGugGUuGCCag -5'
14286 5' -56.6 NC_003521.1 + 136424 0.67 0.905952
Target:  5'- aCAGCCGUccgcgagguagcccuUGaggaAGAGGCACUugcucuggcacuGGCGGUa -3'
miRNA:   3'- -GUCGGCA---------------ACg---UCUCCGUGG------------UUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 222572 0.67 0.903519
Target:  5'- cCAcUCGcaGCAGAGGCGCUGGCGGa- -3'
miRNA:   3'- -GUcGGCaaCGUCUCCGUGGUUGCCag -5'
14286 5' -56.6 NC_003521.1 + 145897 0.67 0.903519
Target:  5'- -cGCCGgcgGCGGGaGCAgCGGCGGUUc -3'
miRNA:   3'- guCGGCaa-CGUCUcCGUgGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 7739 0.67 0.903519
Target:  5'- gCGGCgCGagcgGCGGAGGCGgCGGCaGUCc -3'
miRNA:   3'- -GUCG-GCaa--CGUCUCCGUgGUUGcCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.