miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 5' -56.6 NC_003521.1 + 418 0.72 0.634857
Target:  5'- gCAGCUGUgUGCuggcGAGGCcaaGCCGGCGGUa -3'
miRNA:   3'- -GUCGGCA-ACGu---CUCCG---UGGUUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 946 0.66 0.93622
Target:  5'- cCAGCCGagccaUGCGcaaguGGGCgcaacgagagGCCGGCGGUCu -3'
miRNA:   3'- -GUCGGCa----ACGUc----UCCG----------UGGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 6083 1.1 0.003262
Target:  5'- cCAGCCGUUGCAGAGGCACCAACGGUCg -3'
miRNA:   3'- -GUCGGCAACGUCUCCGUGGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 6501 0.72 0.634857
Target:  5'- aGGCgGUgacgGCAGAGGCucACCGgugacgaggGCGGUCu -3'
miRNA:   3'- gUCGgCAa---CGUCUCCG--UGGU---------UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 6722 0.66 0.93622
Target:  5'- -cGCCGUggUGCAG-GGCcugacgcaGCCAGCGcUCg -3'
miRNA:   3'- guCGGCA--ACGUCuCCG--------UGGUUGCcAG- -5'
14286 5' -56.6 NC_003521.1 + 7739 0.67 0.903519
Target:  5'- gCGGCgCGagcgGCGGAGGCGgCGGCaGUCc -3'
miRNA:   3'- -GUCG-GCaa--CGUCUCCGUgGUUGcCAG- -5'
14286 5' -56.6 NC_003521.1 + 13406 0.67 0.890163
Target:  5'- -cGUCGUUGUGGGGGUGUCAgaugggaACGGUCg -3'
miRNA:   3'- guCGGCAACGUCUCCGUGGU-------UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 16987 0.72 0.684633
Target:  5'- gCAGCCGcaggGaCAGcAGGCGCCcGCGGUg -3'
miRNA:   3'- -GUCGGCaa--C-GUC-UCCGUGGuUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 17483 0.68 0.870159
Target:  5'- aCGGCaccgGUAGcGGCGCCGcCGGUCa -3'
miRNA:   3'- -GUCGgcaaCGUCuCCGUGGUuGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 18737 0.74 0.575124
Target:  5'- gCGGCgauCGUggcgGCGGuGGCGCCGACgGGUCg -3'
miRNA:   3'- -GUCG---GCAa---CGUCuCCGUGGUUG-CCAG- -5'
14286 5' -56.6 NC_003521.1 + 26330 0.73 0.58502
Target:  5'- gGGCCGgcucuccaGgGGAGGCuuCCAGCGGUCc -3'
miRNA:   3'- gUCGGCaa------CgUCUCCGu-GGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 27515 0.67 0.890821
Target:  5'- gGGgCGUgcgGCccGAGGCGCCcACGGUg -3'
miRNA:   3'- gUCgGCAa--CGu-CUCCGUGGuUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 28463 0.68 0.870159
Target:  5'- cCAGCCuuggGCGGu-GCACCAGCGGg- -3'
miRNA:   3'- -GUCGGcaa-CGUCucCGUGGUUGCCag -5'
14286 5' -56.6 NC_003521.1 + 30897 0.67 0.89728
Target:  5'- gGGCCGagcugaacUGCGGcAGGCGagAGCGGUCc -3'
miRNA:   3'- gUCGGCa-------ACGUC-UCCGUggUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 33640 0.66 0.93622
Target:  5'- aGGCCG-UGgAGGGGCgGCCAgcagaGCGGg- -3'
miRNA:   3'- gUCGGCaACgUCUCCG-UGGU-----UGCCag -5'
14286 5' -56.6 NC_003521.1 + 37458 0.66 0.940875
Target:  5'- gCGGCgGUuucUGCGGAGGCGuguguggacGCGGUCu -3'
miRNA:   3'- -GUCGgCA---ACGUCUCCGUggu------UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 38284 0.67 0.913613
Target:  5'- aGGCCGgcgcGCAGcAGGUgcgagagcucgucgGCCAGCGGg- -3'
miRNA:   3'- gUCGGCaa--CGUC-UCCG--------------UGGUUGCCag -5'
14286 5' -56.6 NC_003521.1 + 38302 0.67 0.890821
Target:  5'- gCAGuuGUUGCAggccGAGGCacgGCCAAgGG-Cg -3'
miRNA:   3'- -GUCggCAACGU----CUCCG---UGGUUgCCaG- -5'
14286 5' -56.6 NC_003521.1 + 38728 0.7 0.770902
Target:  5'- cCAGCUGcgGUauuAGAGGCGCCGGgccccguccCGGUCu -3'
miRNA:   3'- -GUCGGCaaCG---UCUCCGUGGUU---------GCCAG- -5'
14286 5' -56.6 NC_003521.1 + 39801 0.68 0.855359
Target:  5'- aGGCUcg-GCGG-GGCGCCGgGCGGUCc -3'
miRNA:   3'- gUCGGcaaCGUCuCCGUGGU-UGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.