miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 5' -56.6 NC_003521.1 + 40276 0.66 0.93622
Target:  5'- uGGCCGuUUGCAcgccuGGGGaCGCCAGacCGGUg -3'
miRNA:   3'- gUCGGC-AACGU-----CUCC-GUGGUU--GCCAg -5'
14286 5' -56.6 NC_003521.1 + 40740 0.72 0.634857
Target:  5'- gCAGCUGUgUGCuggcGAGGCcaaGCCGGCGGUa -3'
miRNA:   3'- -GUCGGCA-ACGu---CUCCG---UGGUUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 44070 0.67 0.903519
Target:  5'- cCGGCCGggGCAGcagacggugcAGGCGCCGccgccaccACcGUCg -3'
miRNA:   3'- -GUCGGCaaCGUC----------UCCGUGGU--------UGcCAG- -5'
14286 5' -56.6 NC_003521.1 + 49836 0.66 0.926229
Target:  5'- -cGCCG-UGCAGAcGGCcguCCAggugGCGGUg -3'
miRNA:   3'- guCGGCaACGUCU-CCGu--GGU----UGCCAg -5'
14286 5' -56.6 NC_003521.1 + 51450 0.7 0.752337
Target:  5'- uGGUgGUaGUAGGGGUAgUAGCGGUCa -3'
miRNA:   3'- gUCGgCAaCGUCUCCGUgGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 52669 0.66 0.945304
Target:  5'- gAGCgGcaGCAGcGGCACCGGCaGcGUCg -3'
miRNA:   3'- gUCGgCaaCGUCuCCGUGGUUG-C-CAG- -5'
14286 5' -56.6 NC_003521.1 + 53354 0.66 0.93622
Target:  5'- cCGGCgCGgcgGCGGAGGgGCCGACa--- -3'
miRNA:   3'- -GUCG-GCaa-CGUCUCCgUGGUUGccag -5'
14286 5' -56.6 NC_003521.1 + 54290 0.69 0.838992
Target:  5'- aGGCCGUUGCGGcuGGCcacguagAgCAGCGcGUCg -3'
miRNA:   3'- gUCGGCAACGUCu-CCG-------UgGUUGC-CAG- -5'
14286 5' -56.6 NC_003521.1 + 55917 0.69 0.83979
Target:  5'- aCGGCgGcgGCaacGGGGGUGCCAGCGGg- -3'
miRNA:   3'- -GUCGgCaaCG---UCUCCGUGGUUGCCag -5'
14286 5' -56.6 NC_003521.1 + 55976 0.71 0.742899
Target:  5'- -cGCCGaugUGCAGGGGC-CgCAGcCGGUCc -3'
miRNA:   3'- guCGGCa--ACGUCUCCGuG-GUU-GCCAG- -5'
14286 5' -56.6 NC_003521.1 + 56264 0.66 0.931338
Target:  5'- aGGCCGgcagGCAGAGGUuggacucgcagGCCAGCa--- -3'
miRNA:   3'- gUCGGCaa--CGUCUCCG-----------UGGUUGccag -5'
14286 5' -56.6 NC_003521.1 + 57100 0.66 0.926229
Target:  5'- uGGCCGg-GUAGAGGCcCCAGCaGcCg -3'
miRNA:   3'- gUCGGCaaCGUCUCCGuGGUUGcCaG- -5'
14286 5' -56.6 NC_003521.1 + 57476 0.71 0.714066
Target:  5'- gUAGCCGUgGCAGuGGCACUucuugcccauGACGG-Cg -3'
miRNA:   3'- -GUCGGCAaCGUCuCCGUGG----------UUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 58770 0.66 0.919246
Target:  5'- cCAGCCacUGCAGGGcggcgcGCGCCGgcgacgacgcauagACGGUCu -3'
miRNA:   3'- -GUCGGcaACGUCUC------CGUGGU--------------UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 68807 0.66 0.940875
Target:  5'- -cGCCGUccggauagacuUGCGGGcccuGGCACaguCGGUCa -3'
miRNA:   3'- guCGGCA-----------ACGUCU----CCGUGguuGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 70179 0.68 0.884145
Target:  5'- cCAcUCGUUGCGGuGGUacACCGGCaGGUCg -3'
miRNA:   3'- -GUcGGCAACGUCuCCG--UGGUUG-CCAG- -5'
14286 5' -56.6 NC_003521.1 + 71286 0.67 0.903519
Target:  5'- gGGCCGcgGCAcgggccccuGGGGCACCAGCa--- -3'
miRNA:   3'- gUCGGCaaCGU---------CUCCGUGGUUGccag -5'
14286 5' -56.6 NC_003521.1 + 72845 0.69 0.830917
Target:  5'- aCGGCCuGggGCGGcgacgguAGGCA-CGGCGGUCg -3'
miRNA:   3'- -GUCGG-CaaCGUC-------UCCGUgGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 73132 0.67 0.89728
Target:  5'- -uGCUGcacgGCGGGGGCAgCGGCGG-Cg -3'
miRNA:   3'- guCGGCaa--CGUCUCCGUgGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 75533 0.66 0.920891
Target:  5'- gAGCUGUgucaguuCAGcGGCGCCGGCGG-Cg -3'
miRNA:   3'- gUCGGCAac-----GUCuCCGUGGUUGCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.