miRNA display CGI


Results 41 - 60 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 5' -56.6 NC_003521.1 + 76699 0.74 0.555453
Target:  5'- gGGuCCGUguaGCGGuGGCACCGGCGG-Cg -3'
miRNA:   3'- gUC-GGCAa--CGUCuCCGUGGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 77010 0.68 0.870159
Target:  5'- -cGCCGUc-CAGGGGCAgCAuGCGGUUg -3'
miRNA:   3'- guCGGCAacGUCUCCGUgGU-UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 79213 0.71 0.722789
Target:  5'- gCAGCaCGUUGCccgaGGGCACCAgaugcccGCGGUa -3'
miRNA:   3'- -GUCG-GCAACGuc--UCCGUGGU-------UGCCAg -5'
14286 5' -56.6 NC_003521.1 + 80070 0.66 0.919246
Target:  5'- --aCCGUUGUugucucugcucaucGGGGGUGCCGACGG-Cg -3'
miRNA:   3'- gucGGCAACG--------------UCUCCGUGGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 82813 0.68 0.870159
Target:  5'- aAGCCGacGagaGGAgGGCACCGGCGG-Ca -3'
miRNA:   3'- gUCGGCaaCg--UCU-CCGUGGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 84637 0.66 0.926229
Target:  5'- uCGGCCa-UGCAGGGGaugUCGugGGUCu -3'
miRNA:   3'- -GUCGGcaACGUCUCCgu-GGUugCCAG- -5'
14286 5' -56.6 NC_003521.1 + 86333 0.68 0.877256
Target:  5'- uCAGCCGggUGguGAGGCcgugcagcgaGCCGAUGuaGUCc -3'
miRNA:   3'- -GUCGGCa-ACguCUCCG----------UGGUUGC--CAG- -5'
14286 5' -56.6 NC_003521.1 + 88525 0.72 0.654828
Target:  5'- gCAGCCG-UGCAGGcGCACCGaaACGGcCu -3'
miRNA:   3'- -GUCGGCaACGUCUcCGUGGU--UGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 89582 0.66 0.930838
Target:  5'- -cGCCGUcccaggccGCGGAagaagaugaagaaGGCGCC-GCGGUCa -3'
miRNA:   3'- guCGGCAa-------CGUCU-------------CCGUGGuUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 89971 0.66 0.940875
Target:  5'- gCGGCCGUU-CGG-GGUucaACCGGCGGg- -3'
miRNA:   3'- -GUCGGCAAcGUCuCCG---UGGUUGCCag -5'
14286 5' -56.6 NC_003521.1 + 91001 0.69 0.83979
Target:  5'- -uGCUGUUGCAGcuGCAgCAGguCGGUCa -3'
miRNA:   3'- guCGGCAACGUCucCGUgGUU--GCCAG- -5'
14286 5' -56.6 NC_003521.1 + 96647 0.68 0.855359
Target:  5'- cCAGCgCGcgGCAGGcGGCGCCGGCGu-- -3'
miRNA:   3'- -GUCG-GCaaCGUCU-CCGUGGUUGCcag -5'
14286 5' -56.6 NC_003521.1 + 97110 0.68 0.870159
Target:  5'- uCGGCCagcgUGCAGaAGGCG-CGGCGGUa -3'
miRNA:   3'- -GUCGGca--ACGUC-UCCGUgGUUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 98024 0.69 0.830917
Target:  5'- aGGCUGUUGCcaccaccgccguuGGuGGCACCGACGa-- -3'
miRNA:   3'- gUCGGCAACG-------------UCuCCGUGGUUGCcag -5'
14286 5' -56.6 NC_003521.1 + 98236 0.66 0.931338
Target:  5'- aGGCgGggagGCGGGGGCGgCCAcgGCGGg- -3'
miRNA:   3'- gUCGgCaa--CGUCUCCGU-GGU--UGCCag -5'
14286 5' -56.6 NC_003521.1 + 98454 0.66 0.931338
Target:  5'- gGGCuaCGUUGgaGGAGGCGgCGGCGGcCg -3'
miRNA:   3'- gUCG--GCAACg-UCUCCGUgGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 98877 0.66 0.940875
Target:  5'- -cGCCGcucgUGCuaGGGGGCGCCGucgucGCGG-Cg -3'
miRNA:   3'- guCGGCa---ACG--UCUCCGUGGU-----UGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 98991 0.68 0.884145
Target:  5'- gAGgCGUcaGgGGAGGUACC-GCGGUCg -3'
miRNA:   3'- gUCgGCAa-CgUCUCCGUGGuUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 100479 0.73 0.614879
Target:  5'- aCGGCCGUUGCuaccgccgccaGGuGGCACCGcgggcgucggACGGUg -3'
miRNA:   3'- -GUCGGCAACG-----------UCuCCGUGGU----------UGCCAg -5'
14286 5' -56.6 NC_003521.1 + 100693 0.76 0.443004
Target:  5'- -uGCUGaUGCGGAGGCGCCGccGCGGcCg -3'
miRNA:   3'- guCGGCaACGUCUCCGUGGU--UGCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.