Results 61 - 80 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14286 | 5' | -56.6 | NC_003521.1 | + | 103631 | 0.66 | 0.93622 |
Target: 5'- cCGGCCGccgacuccaGCGGGGGCAgcUCGGCGG-Cg -3' miRNA: 3'- -GUCGGCaa-------CGUCUCCGU--GGUUGCCaG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 104962 | 0.69 | 0.815104 |
Target: 5'- aGGUCGUgccGCGGGGGCGCC-GCGagacGUCg -3' miRNA: 3'- gUCGGCAa--CGUCUCCGUGGuUGC----CAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 108221 | 0.69 | 0.83979 |
Target: 5'- aAGCCGUUGCGGA--CGCCGACGc-- -3' miRNA: 3'- gUCGGCAACGUCUccGUGGUUGCcag -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 109348 | 0.66 | 0.930838 |
Target: 5'- gCAGCCGgcGCAgGAGGCcgacgagGCCGagagcGCGGcCu -3' miRNA: 3'- -GUCGGCaaCGU-CUCCG-------UGGU-----UGCCaG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 110760 | 0.71 | 0.723755 |
Target: 5'- cCAGCCGUcgGUAGuAGGCuCCAG-GGUCu -3' miRNA: 3'- -GUCGGCAa-CGUC-UCCGuGGUUgCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 110839 | 0.74 | 0.535982 |
Target: 5'- -cGCCGgcGCAGcGGCAgCGACGGUg -3' miRNA: 3'- guCGGCaaCGUCuCCGUgGUUGCCAg -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 114102 | 0.66 | 0.940875 |
Target: 5'- aCGGCUGcugUGCGGugacGGCGCCcaagaucAUGGUCg -3' miRNA: 3'- -GUCGGCa--ACGUCu---CCGUGGu------UGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 115382 | 0.74 | 0.545689 |
Target: 5'- gGGCCGgcaugUGCAG-GGCGCgGGCGGcCg -3' miRNA: 3'- gUCGGCa----ACGUCuCCGUGgUUGCCaG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 115915 | 0.69 | 0.797843 |
Target: 5'- uCAGCuCGcgGUAGAGGUgagGCCAguACGGUUg -3' miRNA: 3'- -GUCG-GCaaCGUCUCCG---UGGU--UGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 116682 | 0.69 | 0.815104 |
Target: 5'- gCAGCgGcgGCGGAGGCAgCGgcGCGGg- -3' miRNA: 3'- -GUCGgCaaCGUCUCCGUgGU--UGCCag -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 116887 | 0.67 | 0.903519 |
Target: 5'- gCGGCUGcgGCGGc-GCGCCGGCGGg- -3' miRNA: 3'- -GUCGGCaaCGUCucCGUGGUUGCCag -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 117043 | 0.66 | 0.93622 |
Target: 5'- aGGCCaGUguuucGCccGAGGCggccgcggaGCCGGCGGUCa -3' miRNA: 3'- gUCGG-CAa----CGu-CUCCG---------UGGUUGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 118747 | 0.72 | 0.664791 |
Target: 5'- aAGUCGcUGCAGAcGGCAUCGACgugaaGGUCa -3' miRNA: 3'- gUCGGCaACGUCU-CCGUGGUUG-----CCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 123433 | 0.67 | 0.89728 |
Target: 5'- aCGGCgGgauagGaCGGAGGCGCCGuaGCGGg- -3' miRNA: 3'- -GUCGgCaa---C-GUCUCCGUGGU--UGCCag -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 125100 | 0.66 | 0.920891 |
Target: 5'- gCAGgCGcUGCGGgauGGGCACC-ACGGcCg -3' miRNA: 3'- -GUCgGCaACGUC---UCCGUGGuUGCCaG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 125689 | 0.68 | 0.884145 |
Target: 5'- uGGCC-UUGUccgacguaguGGAGaCGCCGGCGGUCa -3' miRNA: 3'- gUCGGcAACG----------UCUCcGUGGUUGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 125788 | 0.72 | 0.674729 |
Target: 5'- gCAGCCGgccUGC-GAGGC-CCAGgGGUUg -3' miRNA: 3'- -GUCGGCa--ACGuCUCCGuGGUUgCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 127070 | 0.66 | 0.945304 |
Target: 5'- -uGCCGcgGCAGGGcCACCGACGa-- -3' miRNA: 3'- guCGGCaaCGUCUCcGUGGUUGCcag -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 127411 | 0.67 | 0.909535 |
Target: 5'- uGGUCG-UGCAGcgcguucacguAGGcCGCCAGCGGcUCg -3' miRNA: 3'- gUCGGCaACGUC-----------UCC-GUGGUUGCC-AG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 129269 | 0.83 | 0.183625 |
Target: 5'- uCAGCCGcaccucgagGUAGAGGCGCCGGCGGUa -3' miRNA: 3'- -GUCGGCaa-------CGUCUCCGUGGUUGCCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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