miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 5' -56.6 NC_003521.1 + 240504 0.67 0.915327
Target:  5'- uGGCCGuUUGCAcgcuGGGGaCGCCAGacCGGUg -3'
miRNA:   3'- gUCGGC-AACGU----CUCC-GUGGUU--GCCAg -5'
14286 5' -56.6 NC_003521.1 + 240028 0.68 0.85536
Target:  5'- aGGCUcg-GCGG-GGCGCCGgGCGGUCc -3'
miRNA:   3'- gUCGGcaaCGUCuCCGUGGU-UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 238955 0.7 0.770902
Target:  5'- cCAGCUGcgGUauuAGAGGCGCCGGgccccguccCGGUCu -3'
miRNA:   3'- -GUCGGCaaCG---UCUCCGUGGUU---------GCCAG- -5'
14286 5' -56.6 NC_003521.1 + 236486 0.77 0.390943
Target:  5'- -cGCCGgcgGCGGuGGCGCCAggcauggACGGUCg -3'
miRNA:   3'- guCGGCaa-CGUCuCCGUGGU-------UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 234732 0.68 0.855359
Target:  5'- aUAGCCGUgGCGGAacgccgccGCACCGGCcGUCg -3'
miRNA:   3'- -GUCGGCAaCGUCUc-------CGUGGUUGcCAG- -5'
14286 5' -56.6 NC_003521.1 + 229246 0.67 0.915327
Target:  5'- gGGCC---GCGGAGGUGCUuGCGGUg -3'
miRNA:   3'- gUCGGcaaCGUCUCCGUGGuUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 226884 0.73 0.604904
Target:  5'- gGGCaGcUGCGGGGGCACCAcgGCGGcCa -3'
miRNA:   3'- gUCGgCaACGUCUCCGUGGU--UGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 225055 0.66 0.939502
Target:  5'- -cGCCGcguagaacgacguuUUGCAGAaccauuccaGGCGCCGAUGG-Ca -3'
miRNA:   3'- guCGGC--------------AACGUCU---------CCGUGGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 224084 0.68 0.884145
Target:  5'- cCGGCgGgcGCGc--GCGCCGGCGGUCg -3'
miRNA:   3'- -GUCGgCaaCGUcucCGUGGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 224012 0.67 0.909535
Target:  5'- gCGGCa---GCGGcGGGC-CCGGCGGUCg -3'
miRNA:   3'- -GUCGgcaaCGUC-UCCGuGGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 222572 0.67 0.903519
Target:  5'- cCAcUCGcaGCAGAGGCGCUGGCGGa- -3'
miRNA:   3'- -GUcGGCaaCGUCUCCGUGGUUGCCag -5'
14286 5' -56.6 NC_003521.1 + 222042 0.67 0.909535
Target:  5'- gCAGUaucgGCgGGGGGCACCAGCcGUCg -3'
miRNA:   3'- -GUCGgcaaCG-UCUCCGUGGUUGcCAG- -5'
14286 5' -56.6 NC_003521.1 + 219707 0.68 0.877256
Target:  5'- gGGUCGUcggcaGCGGAGGCA---ACGGUCu -3'
miRNA:   3'- gUCGGCAa----CGUCUCCGUgguUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 215268 0.71 0.714066
Target:  5'- aCAGCUGgaagggcgagaUGCAGAGGCaggccaccGCCAGCGG-Cg -3'
miRNA:   3'- -GUCGGCa----------ACGUCUCCG--------UGGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 212270 0.69 0.815104
Target:  5'- uGGCCGgcgguagGUAGAGGauCAUCAGCGuGUCg -3'
miRNA:   3'- gUCGGCaa-----CGUCUCC--GUGGUUGC-CAG- -5'
14286 5' -56.6 NC_003521.1 + 211156 0.68 0.884145
Target:  5'- cCAGUCGcccauggUGUuuuucGGAGGCGCCGcgcuCGGUCu -3'
miRNA:   3'- -GUCGGCa------ACG-----UCUCCGUGGUu---GCCAG- -5'
14286 5' -56.6 NC_003521.1 + 210747 0.66 0.9283
Target:  5'- aGGCCGUgGCGG-GGCACaugaacaguuccccgCGugGGUUg -3'
miRNA:   3'- gUCGGCAaCGUCuCCGUG---------------GUugCCAG- -5'
14286 5' -56.6 NC_003521.1 + 201173 0.66 0.93622
Target:  5'- cCAGCCGagccaUGCGcaaguGGGCgcaacgagagGCCGGCGGUCu -3'
miRNA:   3'- -GUCGGCa----ACGUc----UCCG----------UGGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 198269 0.74 0.535982
Target:  5'- aUAGCCGUccCAGcGGCACCAGCaGUCa -3'
miRNA:   3'- -GUCGGCAacGUCuCCGUGGUUGcCAG- -5'
14286 5' -56.6 NC_003521.1 + 198076 0.68 0.877256
Target:  5'- aCGGCCGgaUGCguugugGGGGGCGuCUGACGGUg -3'
miRNA:   3'- -GUCGGCa-ACG------UCUCCGU-GGUUGCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.