miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 5' -56.6 NC_003521.1 + 198020 0.67 0.907754
Target:  5'- -uGCCGUUGCGGcgcgugcagccgccGGGCugCA-CGGg- -3'
miRNA:   3'- guCGGCAACGUC--------------UCCGugGUuGCCag -5'
14286 5' -56.6 NC_003521.1 + 197836 0.81 0.250837
Target:  5'- aCGGCCGUcUGCAGgucgucgguGGGCGCCGGCgGGUCg -3'
miRNA:   3'- -GUCGGCA-ACGUC---------UCCGUGGUUG-CCAG- -5'
14286 5' -56.6 NC_003521.1 + 197173 0.66 0.940875
Target:  5'- gGGCCuGgcaggGCuGGAGGCGgUGGCGGUCc -3'
miRNA:   3'- gUCGG-Caa---CG-UCUCCGUgGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 196971 0.66 0.931338
Target:  5'- gAGCCG--GCcGGGGCGCCuguGACGGg- -3'
miRNA:   3'- gUCGGCaaCGuCUCCGUGG---UUGCCag -5'
14286 5' -56.6 NC_003521.1 + 196039 0.66 0.945304
Target:  5'- gCAGCagGUUGUAGA-GCACCgGGCGGa- -3'
miRNA:   3'- -GUCGg-CAACGUCUcCGUGG-UUGCCag -5'
14286 5' -56.6 NC_003521.1 + 192452 0.66 0.940875
Target:  5'- gGGCaug-GCGGcGGCGCCGguuuccaggacgGCGGUCg -3'
miRNA:   3'- gUCGgcaaCGUCuCCGUGGU------------UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 191696 0.69 0.831732
Target:  5'- aCAGuccCCGcaGCAGcGGCGCC-GCGGUCa -3'
miRNA:   3'- -GUC---GGCaaCGUCuCCGUGGuUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 188040 0.66 0.920345
Target:  5'- uCAGCCGgUGCAGcGGGUugucgauGCC-GCGGUa -3'
miRNA:   3'- -GUCGGCaACGUC-UCCG-------UGGuUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 187838 0.68 0.883465
Target:  5'- aGGgCGUUGCGGAcGGCcuuccucACCGccuguugcaugGCGGUCa -3'
miRNA:   3'- gUCgGCAACGUCU-CCG-------UGGU-----------UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 187576 0.72 0.634857
Target:  5'- -cGCCaaGUccGCGGGGGCuucGCCGGCGGUCg -3'
miRNA:   3'- guCGG--CAa-CGUCUCCG---UGGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 186927 0.68 0.884145
Target:  5'- -cGCCGgugGCGGGGGCGgCGGCGa-- -3'
miRNA:   3'- guCGGCaa-CGUCUCCGUgGUUGCcag -5'
14286 5' -56.6 NC_003521.1 + 186792 0.68 0.877256
Target:  5'- uGGCgGcgGCGGGGGCAagaagcaCGGCGGUUc -3'
miRNA:   3'- gUCGgCaaCGUCUCCGUg------GUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 186659 0.74 0.579078
Target:  5'- gCGGCgGUgGCGGAGGCggcggccucuccaacGCCGGCGGUa -3'
miRNA:   3'- -GUCGgCAaCGUCUCCG---------------UGGUUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 186597 0.67 0.913613
Target:  5'- gCAGCCGcccgGCAGucGGUacugccggacaccgGCCAgcaGCGGUCg -3'
miRNA:   3'- -GUCGGCaa--CGUCu-CCG--------------UGGU---UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 185725 0.7 0.780011
Target:  5'- -cGCCGggUGCGGAGGUgaucGCCgAGCGGg- -3'
miRNA:   3'- guCGGCa-ACGUCUCCG----UGG-UUGCCag -5'
14286 5' -56.6 NC_003521.1 + 180501 0.67 0.890821
Target:  5'- -uGCCGUUGCccAGAGaGC-CCGugGGg- -3'
miRNA:   3'- guCGGCAACG--UCUC-CGuGGUugCCag -5'
14286 5' -56.6 NC_003521.1 + 179461 0.67 0.915327
Target:  5'- gAGCUGUUGCAGgaAGcGgGCCGugGG-Ca -3'
miRNA:   3'- gUCGGCAACGUC--UC-CgUGGUugCCaG- -5'
14286 5' -56.6 NC_003521.1 + 178007 0.67 0.909535
Target:  5'- gGGCgGguagGaCGGAGGCGgCC-ACGGUCg -3'
miRNA:   3'- gUCGgCaa--C-GUCUCCGU-GGuUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 176377 0.68 0.855359
Target:  5'- uCAGCg--UGCGGAGGUACUcGCGcGUCu -3'
miRNA:   3'- -GUCGgcaACGUCUCCGUGGuUGC-CAG- -5'
14286 5' -56.6 NC_003521.1 + 173256 0.66 0.93622
Target:  5'- uGGgCGUg--GGAGGCACgGGCGGUUu -3'
miRNA:   3'- gUCgGCAacgUCUCCGUGgUUGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.