miRNA display CGI


Results 41 - 60 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 5' -56.6 NC_003521.1 + 172391 0.73 0.59495
Target:  5'- -cGCgGUUG-AGGGGCGCCGGCGGa- -3'
miRNA:   3'- guCGgCAACgUCUCCGUGGUUGCCag -5'
14286 5' -56.6 NC_003521.1 + 172302 0.72 0.674729
Target:  5'- -cGCCGUccggUGuCGGuGGCGCCAGgcCGGUCg -3'
miRNA:   3'- guCGGCA----AC-GUCuCCGUGGUU--GCCAG- -5'
14286 5' -56.6 NC_003521.1 + 172102 0.69 0.806549
Target:  5'- aAGuCCGUgcggGCGGccgacGGCGCC-ACGGUCa -3'
miRNA:   3'- gUC-GGCAa---CGUCu----CCGUGGuUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 170247 0.68 0.884145
Target:  5'- aCAGUCGUcGCcuuGGAGGUACUGAUGG-Ca -3'
miRNA:   3'- -GUCGGCAaCG---UCUCCGUGGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 170197 0.68 0.884145
Target:  5'- -uGCCGguggagGUAGuGGCACgAGgGGUCg -3'
miRNA:   3'- guCGGCaa----CGUCuCCGUGgUUgCCAG- -5'
14286 5' -56.6 NC_003521.1 + 169963 0.69 0.831732
Target:  5'- -cGUCGUUGCucuccuccugGGAGGCGgCGGCGGg- -3'
miRNA:   3'- guCGGCAACG----------UCUCCGUgGUUGCCag -5'
14286 5' -56.6 NC_003521.1 + 168632 0.7 0.770902
Target:  5'- -uGCUGUUGCuGcuGCGCC-ACGGUCa -3'
miRNA:   3'- guCGGCAACGuCucCGUGGuUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 168539 0.66 0.93622
Target:  5'- gCGGCCagcgcgGCGGcGGCGCUGGCGGg- -3'
miRNA:   3'- -GUCGGcaa---CGUCuCCGUGGUUGCCag -5'
14286 5' -56.6 NC_003521.1 + 167601 0.7 0.792551
Target:  5'- gAGCgGcgcGCAGAGGCGCCGcaggcgcucgggguCGGUCa -3'
miRNA:   3'- gUCGgCaa-CGUCUCCGUGGUu-------------GCCAG- -5'
14286 5' -56.6 NC_003521.1 + 166911 0.66 0.920345
Target:  5'- gGGCaCGggGCAGAGGUagacgggGCCcACGGcCu -3'
miRNA:   3'- gUCG-GCaaCGUCUCCG-------UGGuUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 166639 0.68 0.85536
Target:  5'- gCAGCUGUUGCu--GGUGCCGuagcgACGGUa -3'
miRNA:   3'- -GUCGGCAACGucuCCGUGGU-----UGCCAg -5'
14286 5' -56.6 NC_003521.1 + 164740 0.66 0.945304
Target:  5'- cCAGCgCGggagGGGGGCAUC-GCGGUCg -3'
miRNA:   3'- -GUCG-GCaacgUCUCCGUGGuUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 163365 0.71 0.694497
Target:  5'- gCGGCgGcgGCAGugucacGGGCACCAACGG-Cg -3'
miRNA:   3'- -GUCGgCaaCGUC------UCCGUGGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 161724 0.67 0.915327
Target:  5'- gAGCgGUUGCGcGAGGUcaucGCCAGCGuGg- -3'
miRNA:   3'- gUCGgCAACGU-CUCCG----UGGUUGC-Cag -5'
14286 5' -56.6 NC_003521.1 + 161180 0.74 0.539858
Target:  5'- -cGCCGcUGCAgcagcagacgacgccGAGGCGCC-GCGGUCg -3'
miRNA:   3'- guCGGCaACGU---------------CUCCGUGGuUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 159826 0.74 0.545689
Target:  5'- cCGGCCGUgaggcgcugcGCGGAGGCGCgagcgUAACGGUUg -3'
miRNA:   3'- -GUCGGCAa---------CGUCUCCGUG-----GUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 150618 0.68 0.862858
Target:  5'- gGGCUGUUGCGGcGGCugCugcgcaGGCGGg- -3'
miRNA:   3'- gUCGGCAACGUCuCCGugG------UUGCCag -5'
14286 5' -56.6 NC_003521.1 + 148559 0.73 0.624865
Target:  5'- cCGGCCGguagcgGCAGcGGCACCcaggGAgGGUCg -3'
miRNA:   3'- -GUCGGCaa----CGUCuCCGUGG----UUgCCAG- -5'
14286 5' -56.6 NC_003521.1 + 148417 0.66 0.940875
Target:  5'- gAGCCauggUGCGGGcGGCcgcGCCGGCGGcUCc -3'
miRNA:   3'- gUCGGca--ACGUCU-CCG---UGGUUGCC-AG- -5'
14286 5' -56.6 NC_003521.1 + 145897 0.67 0.903519
Target:  5'- -cGCCGgcgGCGGGaGCAgCGGCGGUUc -3'
miRNA:   3'- guCGGCaa-CGUCUcCGUgGUUGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.