miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 5' -56.6 NC_003521.1 + 137246 0.71 0.742899
Target:  5'- cCGGCCGggGCcGAcGGCGgCAGCGGg- -3'
miRNA:   3'- -GUCGGCaaCGuCU-CCGUgGUUGCCag -5'
14286 5' -56.6 NC_003521.1 + 418 0.72 0.634857
Target:  5'- gCAGCUGUgUGCuggcGAGGCcaaGCCGGCGGUa -3'
miRNA:   3'- -GUCGGCA-ACGu---CUCCG---UGGUUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 88525 0.72 0.654828
Target:  5'- gCAGCCG-UGCAGGcGCACCGaaACGGcCu -3'
miRNA:   3'- -GUCGGCaACGUCUcCGUGGU--UGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 125788 0.72 0.674729
Target:  5'- gCAGCCGgccUGC-GAGGC-CCAGgGGUUg -3'
miRNA:   3'- -GUCGGCa--ACGuCUCCGuGGUUgCCAG- -5'
14286 5' -56.6 NC_003521.1 + 57476 0.71 0.714066
Target:  5'- gUAGCCGUgGCAGuGGCACUucuugcccauGACGG-Cg -3'
miRNA:   3'- -GUCGGCAaCGUCuCCGUGG----------UUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 215268 0.71 0.714066
Target:  5'- aCAGCUGgaagggcgagaUGCAGAGGCaggccaccGCCAGCGG-Cg -3'
miRNA:   3'- -GUCGGCa----------ACGUCUCCG--------UGGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 79213 0.71 0.722789
Target:  5'- gCAGCaCGUUGCccgaGGGCACCAgaugcccGCGGUa -3'
miRNA:   3'- -GUCG-GCAACGuc--UCCGUGGU-------UGCCAg -5'
14286 5' -56.6 NC_003521.1 + 110760 0.71 0.723755
Target:  5'- cCAGCCGUcgGUAGuAGGCuCCAG-GGUCu -3'
miRNA:   3'- -GUCGGCAa-CGUC-UCCGuGGUUgCCAG- -5'
14286 5' -56.6 NC_003521.1 + 55976 0.71 0.742899
Target:  5'- -cGCCGaugUGCAGGGGC-CgCAGcCGGUCc -3'
miRNA:   3'- guCGGCa--ACGUCUCCGuG-GUU-GCCAG- -5'
14286 5' -56.6 NC_003521.1 + 187576 0.72 0.634857
Target:  5'- -cGCCaaGUccGCGGGGGCuucGCCGGCGGUCg -3'
miRNA:   3'- guCGG--CAa-CGUCUCCG---UGGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 100479 0.73 0.614879
Target:  5'- aCGGCCGUUGCuaccgccgccaGGuGGCACCGcgggcgucggACGGUg -3'
miRNA:   3'- -GUCGGCAACG-----------UCuCCGUGGU----------UGCCAg -5'
14286 5' -56.6 NC_003521.1 + 226884 0.73 0.604904
Target:  5'- gGGCaGcUGCGGGGGCACCAcgGCGGcCa -3'
miRNA:   3'- gUCGgCaACGUCUCCGUGGU--UGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 100693 0.76 0.443004
Target:  5'- -uGCUGaUGCGGAGGCGCCGccGCGGcCg -3'
miRNA:   3'- guCGGCaACGUCUCCGUGGU--UGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 132357 0.75 0.497812
Target:  5'- gAGCaCGUUGCAG-GGUAUCAGCGG-Ca -3'
miRNA:   3'- gUCG-GCAACGUCuCCGUGGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 198269 0.74 0.535982
Target:  5'- aUAGCCGUccCAGcGGCACCAGCaGUCa -3'
miRNA:   3'- -GUCGGCAacGUCuCCGUGGUUGcCAG- -5'
14286 5' -56.6 NC_003521.1 + 115382 0.74 0.545689
Target:  5'- gGGCCGgcaugUGCAG-GGCGCgGGCGGcCg -3'
miRNA:   3'- gUCGGCa----ACGUCuCCGUGgUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 159826 0.74 0.545689
Target:  5'- cCGGCCGUgaggcgcugcGCGGAGGCGCgagcgUAACGGUUg -3'
miRNA:   3'- -GUCGGCAa---------CGUCUCCGUG-----GUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 76699 0.74 0.555453
Target:  5'- gGGuCCGUguaGCGGuGGCACCGGCGG-Cg -3'
miRNA:   3'- gUC-GGCAa--CGUCuCCGUGGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 18737 0.74 0.575124
Target:  5'- gCGGCgauCGUggcgGCGGuGGCGCCGACgGGUCg -3'
miRNA:   3'- -GUCG---GCAa---CGUCuCCGUGGUUG-CCAG- -5'
14286 5' -56.6 NC_003521.1 + 26330 0.73 0.58502
Target:  5'- gGGCCGgcucuccaGgGGAGGCuuCCAGCGGUCc -3'
miRNA:   3'- gUCGGCaa------CgUCUCCGu-GGUUGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.