Results 41 - 60 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14286 | 5' | -56.6 | NC_003521.1 | + | 159826 | 0.74 | 0.545689 |
Target: 5'- cCGGCCGUgaggcgcugcGCGGAGGCGCgagcgUAACGGUUg -3' miRNA: 3'- -GUCGGCAa---------CGUCUCCGUG-----GUUGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 115382 | 0.74 | 0.545689 |
Target: 5'- gGGCCGgcaugUGCAG-GGCGCgGGCGGcCg -3' miRNA: 3'- gUCGGCa----ACGUCuCCGUGgUUGCCaG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 198269 | 0.74 | 0.535982 |
Target: 5'- aUAGCCGUccCAGcGGCACCAGCaGUCa -3' miRNA: 3'- -GUCGGCAacGUCuCCGUGGUUGcCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 132357 | 0.75 | 0.497812 |
Target: 5'- gAGCaCGUUGCAG-GGUAUCAGCGG-Ca -3' miRNA: 3'- gUCG-GCAACGUCuCCGUGGUUGCCaG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 100693 | 0.76 | 0.443004 |
Target: 5'- -uGCUGaUGCGGAGGCGCCGccGCGGcCg -3' miRNA: 3'- guCGGCaACGUCUCCGUGGU--UGCCaG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 125788 | 0.72 | 0.674729 |
Target: 5'- gCAGCCGgccUGC-GAGGC-CCAGgGGUUg -3' miRNA: 3'- -GUCGGCa--ACGuCUCCGuGGUUgCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 57476 | 0.71 | 0.714066 |
Target: 5'- gUAGCCGUgGCAGuGGCACUucuugcccauGACGG-Cg -3' miRNA: 3'- -GUCGGCAaCGUCuCCGUGG----------UUGCCaG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 54290 | 0.69 | 0.838992 |
Target: 5'- aGGCCGUUGCGGcuGGCcacguagAgCAGCGcGUCg -3' miRNA: 3'- gUCGGCAACGUCu-CCG-------UgGUUGC-CAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 72845 | 0.69 | 0.830917 |
Target: 5'- aCGGCCuGggGCGGcgacgguAGGCA-CGGCGGUCg -3' miRNA: 3'- -GUCGG-CaaCGUC-------UCCGUgGUUGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 212270 | 0.69 | 0.815104 |
Target: 5'- uGGCCGgcgguagGUAGAGGauCAUCAGCGuGUCg -3' miRNA: 3'- gUCGGCaa-----CGUCUCC--GUGGUUGC-CAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 104962 | 0.69 | 0.815104 |
Target: 5'- aGGUCGUgccGCGGGGGCGCC-GCGagacGUCg -3' miRNA: 3'- gUCGGCAa--CGUCUCCGUGGuUGC----CAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 115915 | 0.69 | 0.797843 |
Target: 5'- uCAGCuCGcgGUAGAGGUgagGCCAguACGGUUg -3' miRNA: 3'- -GUCG-GCaaCGUCUCCG---UGGU--UGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 238955 | 0.7 | 0.770902 |
Target: 5'- cCAGCUGcgGUauuAGAGGCGCCGGgccccguccCGGUCu -3' miRNA: 3'- -GUCGGCaaCG---UCUCCGUGGUU---------GCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 168632 | 0.7 | 0.770902 |
Target: 5'- -uGCUGUUGCuGcuGCGCC-ACGGUCa -3' miRNA: 3'- guCGGCAACGuCucCGUGGuUGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 51450 | 0.7 | 0.752337 |
Target: 5'- uGGUgGUaGUAGGGGUAgUAGCGGUCa -3' miRNA: 3'- gUCGgCAaCGUCUCCGUgGUUGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 137246 | 0.71 | 0.742899 |
Target: 5'- cCGGCCGggGCcGAcGGCGgCAGCGGg- -3' miRNA: 3'- -GUCGGCaaCGuCU-CCGUgGUUGCCag -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 55976 | 0.71 | 0.742899 |
Target: 5'- -cGCCGaugUGCAGGGGC-CgCAGcCGGUCc -3' miRNA: 3'- guCGGCa--ACGUCUCCGuG-GUU-GCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 110760 | 0.71 | 0.723755 |
Target: 5'- cCAGCCGUcgGUAGuAGGCuCCAG-GGUCu -3' miRNA: 3'- -GUCGGCAa-CGUC-UCCGuGGUUgCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 79213 | 0.71 | 0.722789 |
Target: 5'- gCAGCaCGUUGCccgaGGGCACCAgaugcccGCGGUa -3' miRNA: 3'- -GUCG-GCAACGuc--UCCGUGGU-------UGCCAg -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 215268 | 0.71 | 0.714066 |
Target: 5'- aCAGCUGgaagggcgagaUGCAGAGGCaggccaccGCCAGCGG-Cg -3' miRNA: 3'- -GUCGGCa----------ACGUCUCCG--------UGGUUGCCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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