miRNA display CGI


Results 61 - 80 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 5' -56.6 NC_003521.1 + 55976 0.71 0.742899
Target:  5'- -cGCCGaugUGCAGGGGC-CgCAGcCGGUCc -3'
miRNA:   3'- guCGGCa--ACGUCUCCGuG-GUU-GCCAG- -5'
14286 5' -56.6 NC_003521.1 + 137246 0.71 0.742899
Target:  5'- cCGGCCGggGCcGAcGGCGgCAGCGGg- -3'
miRNA:   3'- -GUCGGCaaCGuCU-CCGUgGUUGCCag -5'
14286 5' -56.6 NC_003521.1 + 240028 0.68 0.85536
Target:  5'- aGGCUcg-GCGG-GGCGCCGgGCGGUCc -3'
miRNA:   3'- gUCGGcaaCGUCuCCGUGGU-UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 150618 0.68 0.862858
Target:  5'- gGGCUGUUGCGGcGGCugCugcgcaGGCGGg- -3'
miRNA:   3'- gUCGGCAACGUCuCCGugG------UUGCCag -5'
14286 5' -56.6 NC_003521.1 + 17483 0.68 0.870159
Target:  5'- aCGGCaccgGUAGcGGCGCCGcCGGUCa -3'
miRNA:   3'- -GUCGgcaaCGUCuCCGUGGUuGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 82813 0.68 0.870159
Target:  5'- aAGCCGacGagaGGAgGGCACCGGCGG-Ca -3'
miRNA:   3'- gUCGGCaaCg--UCU-CCGUGGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 86333 0.68 0.877256
Target:  5'- uCAGCCGggUGguGAGGCcgugcagcgaGCCGAUGuaGUCc -3'
miRNA:   3'- -GUCGGCa-ACguCUCCG----------UGGUUGC--CAG- -5'
14286 5' -56.6 NC_003521.1 + 198076 0.68 0.877256
Target:  5'- aCGGCCGgaUGCguugugGGGGGCGuCUGACGGUg -3'
miRNA:   3'- -GUCGGCa-ACG------UCUCCGU-GGUUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 187838 0.68 0.883465
Target:  5'- aGGgCGUUGCGGAcGGCcuuccucACCGccuguugcaugGCGGUCa -3'
miRNA:   3'- gUCgGCAACGUCU-CCG-------UGGU-----------UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 98991 0.68 0.884145
Target:  5'- gAGgCGUcaGgGGAGGUACC-GCGGUCg -3'
miRNA:   3'- gUCgGCAa-CgUCUCCGUGGuUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 166639 0.68 0.85536
Target:  5'- gCAGCUGUUGCu--GGUGCCGuagcgACGGUa -3'
miRNA:   3'- -GUCGGCAACGucuCCGUGGU-----UGCCAg -5'
14286 5' -56.6 NC_003521.1 + 129365 0.68 0.85536
Target:  5'- aGGCgGUUGCAGaAGGUGCCGaagAUGGcCu -3'
miRNA:   3'- gUCGgCAACGUC-UCCGUGGU---UGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 51450 0.7 0.752337
Target:  5'- uGGUgGUaGUAGGGGUAgUAGCGGUCa -3'
miRNA:   3'- gUCGgCAaCGUCUCCGUgGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 168632 0.7 0.770902
Target:  5'- -uGCUGUUGCuGcuGCGCC-ACGGUCa -3'
miRNA:   3'- guCGGCAACGuCucCGUGGuUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 238955 0.7 0.770902
Target:  5'- cCAGCUGcgGUauuAGAGGCGCCGGgccccguccCGGUCu -3'
miRNA:   3'- -GUCGGCaaCG---UCUCCGUGGUU---------GCCAG- -5'
14286 5' -56.6 NC_003521.1 + 115915 0.69 0.797843
Target:  5'- uCAGCuCGcgGUAGAGGUgagGCCAguACGGUUg -3'
miRNA:   3'- -GUCG-GCaaCGUCUCCG---UGGU--UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 104962 0.69 0.815104
Target:  5'- aGGUCGUgccGCGGGGGCGCC-GCGagacGUCg -3'
miRNA:   3'- gUCGGCAa--CGUCUCCGUGGuUGC----CAG- -5'
14286 5' -56.6 NC_003521.1 + 212270 0.69 0.815104
Target:  5'- uGGCCGgcgguagGUAGAGGauCAUCAGCGuGUCg -3'
miRNA:   3'- gUCGGCaa-----CGUCUCC--GUGGUUGC-CAG- -5'
14286 5' -56.6 NC_003521.1 + 72845 0.69 0.830917
Target:  5'- aCGGCCuGggGCGGcgacgguAGGCA-CGGCGGUCg -3'
miRNA:   3'- -GUCGG-CaaCGUC-------UCCGUgGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 54290 0.69 0.838992
Target:  5'- aGGCCGUUGCGGcuGGCcacguagAgCAGCGcGUCg -3'
miRNA:   3'- gUCGGCAACGUCu-CCG-------UgGUUGC-CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.