miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 5' -56.6 NC_003521.1 + 6083 1.1 0.003262
Target:  5'- cCAGCCGUUGCAGAGGCACCAACGGUCg -3'
miRNA:   3'- -GUCGGCAACGUCUCCGUGGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 167601 0.7 0.792551
Target:  5'- gAGCgGcgcGCAGAGGCGCCGcaggcgcucgggguCGGUCa -3'
miRNA:   3'- gUCGgCaa-CGUCUCCGUGGUu-------------GCCAG- -5'
14286 5' -56.6 NC_003521.1 + 116682 0.69 0.815104
Target:  5'- gCAGCgGcgGCGGAGGCAgCGgcGCGGg- -3'
miRNA:   3'- -GUCGgCaaCGUCUCCGUgGU--UGCCag -5'
14286 5' -56.6 NC_003521.1 + 196039 0.66 0.945304
Target:  5'- gCAGCagGUUGUAGA-GCACCgGGCGGa- -3'
miRNA:   3'- -GUCGg-CAACGUCUcCGUGG-UUGCCag -5'
14286 5' -56.6 NC_003521.1 + 110839 0.74 0.535982
Target:  5'- -cGCCGgcGCAGcGGCAgCGACGGUg -3'
miRNA:   3'- guCGGCaaCGUCuCCGUgGUUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 161180 0.74 0.539858
Target:  5'- -cGCCGcUGCAgcagcagacgacgccGAGGCGCC-GCGGUCg -3'
miRNA:   3'- guCGGCaACGU---------------CUCCGUGGuUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 172391 0.73 0.59495
Target:  5'- -cGCgGUUG-AGGGGCGCCGGCGGa- -3'
miRNA:   3'- guCGgCAACgUCUCCGUGGUUGCCag -5'
14286 5' -56.6 NC_003521.1 + 148559 0.73 0.624865
Target:  5'- cCGGCCGguagcgGCAGcGGCACCcaggGAgGGUCg -3'
miRNA:   3'- -GUCGGCaa----CGUCuCCGUGG----UUgCCAG- -5'
14286 5' -56.6 NC_003521.1 + 118747 0.72 0.664791
Target:  5'- aAGUCGcUGCAGAcGGCAUCGACgugaaGGUCa -3'
miRNA:   3'- gUCGGCaACGUCU-CCGUGGUUG-----CCAG- -5'
14286 5' -56.6 NC_003521.1 + 185725 0.7 0.780011
Target:  5'- -cGCCGggUGCGGAGGUgaucGCCgAGCGGg- -3'
miRNA:   3'- guCGGCa-ACGUCUCCG----UGG-UUGCCag -5'
14286 5' -56.6 NC_003521.1 + 16987 0.72 0.684633
Target:  5'- gCAGCCGcaggGaCAGcAGGCGCCcGCGGUg -3'
miRNA:   3'- -GUCGGCaa--C-GUC-UCCGUGGuUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 40740 0.72 0.634857
Target:  5'- gCAGCUGUgUGCuggcGAGGCcaaGCCGGCGGUa -3'
miRNA:   3'- -GUCGGCA-ACGu---CUCCG---UGGUUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 129269 0.83 0.183625
Target:  5'- uCAGCCGcaccucgagGUAGAGGCGCCGGCGGUa -3'
miRNA:   3'- -GUCGGCaa-------CGUCUCCGUGGUUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 163365 0.71 0.694497
Target:  5'- gCGGCgGcgGCAGugucacGGGCACCAACGG-Cg -3'
miRNA:   3'- -GUCGgCaaCGUC------UCCGUGGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 197836 0.81 0.250837
Target:  5'- aCGGCCGUcUGCAGgucgucgguGGGCGCCGGCgGGUCg -3'
miRNA:   3'- -GUCGGCA-ACGUC---------UCCGUGGUUG-CCAG- -5'
14286 5' -56.6 NC_003521.1 + 6501 0.72 0.634857
Target:  5'- aGGCgGUgacgGCAGAGGCucACCGgugacgaggGCGGUCu -3'
miRNA:   3'- gUCGgCAa---CGUCUCCG--UGGU---------UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 38728 0.7 0.770902
Target:  5'- cCAGCUGcgGUauuAGAGGCGCCGGgccccguccCGGUCu -3'
miRNA:   3'- -GUCGGCaaCG---UCUCCGUGGUU---------GCCAG- -5'
14286 5' -56.6 NC_003521.1 + 172102 0.69 0.806549
Target:  5'- aAGuCCGUgcggGCGGccgacGGCGCC-ACGGUCa -3'
miRNA:   3'- gUC-GGCAa---CGUCu----CCGUGGuUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 236486 0.77 0.390943
Target:  5'- -cGCCGgcgGCGGuGGCGCCAggcauggACGGUCg -3'
miRNA:   3'- guCGGCaa-CGUCuCCGUGGU-------UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 186659 0.74 0.579078
Target:  5'- gCGGCgGUgGCGGAGGCggcggccucuccaacGCCGGCGGUa -3'
miRNA:   3'- -GUCGgCAaCGUCUCCG---------------UGGUUGCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.