Results 21 - 40 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14286 | 5' | -56.6 | NC_003521.1 | + | 169963 | 0.69 | 0.831732 |
Target: 5'- -cGUCGUUGCucuccuccugGGAGGCGgCGGCGGg- -3' miRNA: 3'- guCGGCAACG----------UCUCCGUgGUUGCCag -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 116682 | 0.69 | 0.815104 |
Target: 5'- gCAGCgGcgGCGGAGGCAgCGgcGCGGg- -3' miRNA: 3'- -GUCGgCaaCGUCUCCGUgGU--UGCCag -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 40740 | 0.72 | 0.634857 |
Target: 5'- gCAGCUGUgUGCuggcGAGGCcaaGCCGGCGGUa -3' miRNA: 3'- -GUCGGCA-ACGu---CUCCG---UGGUUGCCAg -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 236486 | 0.77 | 0.390943 |
Target: 5'- -cGCCGgcgGCGGuGGCGCCAggcauggACGGUCg -3' miRNA: 3'- guCGGCaa-CGUCuCCGUGGU-------UGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 186792 | 0.68 | 0.877256 |
Target: 5'- uGGCgGcgGCGGGGGCAagaagcaCGGCGGUUc -3' miRNA: 3'- gUCGgCaaCGUCUCCGUg------GUUGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 96647 | 0.68 | 0.855359 |
Target: 5'- cCAGCgCGcgGCAGGcGGCGCCGGCGu-- -3' miRNA: 3'- -GUCG-GCaaCGUCU-CCGUGGUUGCcag -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 167601 | 0.7 | 0.792551 |
Target: 5'- gAGCgGcgcGCAGAGGCGCCGcaggcgcucgggguCGGUCa -3' miRNA: 3'- gUCGgCaa-CGUCUCCGUGGUu-------------GCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 197836 | 0.81 | 0.250837 |
Target: 5'- aCGGCCGUcUGCAGgucgucgguGGGCGCCGGCgGGUCg -3' miRNA: 3'- -GUCGGCA-ACGUC---------UCCGUGGUUG-CCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 108221 | 0.69 | 0.83979 |
Target: 5'- aAGCCGUUGCGGA--CGCCGACGc-- -3' miRNA: 3'- gUCGGCAACGUCUccGUGGUUGCcag -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 129269 | 0.83 | 0.183625 |
Target: 5'- uCAGCCGcaccucgagGUAGAGGCGCCGGCGGUa -3' miRNA: 3'- -GUCGGCaa-------CGUCUCCGUGGUUGCCAg -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 172102 | 0.69 | 0.806549 |
Target: 5'- aAGuCCGUgcggGCGGccgacGGCGCC-ACGGUCa -3' miRNA: 3'- gUC-GGCAa---CGUCu----CCGUGGuUGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 191696 | 0.69 | 0.831732 |
Target: 5'- aCAGuccCCGcaGCAGcGGCGCC-GCGGUCa -3' miRNA: 3'- -GUC---GGCaaCGUCuCCGUGGuUGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 163365 | 0.71 | 0.694497 |
Target: 5'- gCGGCgGcgGCAGugucacGGGCACCAACGG-Cg -3' miRNA: 3'- -GUCGgCaaCGUC------UCCGUGGUUGCCaG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 118747 | 0.72 | 0.664791 |
Target: 5'- aAGUCGcUGCAGAcGGCAUCGACgugaaGGUCa -3' miRNA: 3'- gUCGGCaACGUCU-CCGUGGUUG-----CCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 172391 | 0.73 | 0.59495 |
Target: 5'- -cGCgGUUG-AGGGGCGCCGGCGGa- -3' miRNA: 3'- guCGgCAACgUCUCCGUGGUUGCCag -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 110839 | 0.74 | 0.535982 |
Target: 5'- -cGCCGgcGCAGcGGCAgCGACGGUg -3' miRNA: 3'- guCGGCaaCGUCuCCGUgGUUGCCAg -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 13406 | 0.67 | 0.890163 |
Target: 5'- -cGUCGUUGUGGGGGUGUCAgaugggaACGGUCg -3' miRNA: 3'- guCGGCAACGUCUCCGUGGU-------UGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 219707 | 0.68 | 0.877256 |
Target: 5'- gGGUCGUcggcaGCGGAGGCA---ACGGUCu -3' miRNA: 3'- gUCGGCAa----CGUCUCCGUgguUGCCAG- -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 28463 | 0.68 | 0.870159 |
Target: 5'- cCAGCCuuggGCGGu-GCACCAGCGGg- -3' miRNA: 3'- -GUCGGcaa-CGUCucCGUGGUUGCCag -5' |
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14286 | 5' | -56.6 | NC_003521.1 | + | 176377 | 0.68 | 0.855359 |
Target: 5'- uCAGCg--UGCGGAGGUACUcGCGcGUCu -3' miRNA: 3'- -GUCGgcaACGUCUCCGUGGuUGC-CAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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