miRNA display CGI


Results 41 - 60 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 5' -56.6 NC_003521.1 + 77010 0.68 0.870159
Target:  5'- -cGCCGUc-CAGGGGCAgCAuGCGGUUg -3'
miRNA:   3'- guCGGCAacGUCUCCGUgGU-UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 167601 0.7 0.792551
Target:  5'- gAGCgGcgcGCAGAGGCGCCGcaggcgcucgggguCGGUCa -3'
miRNA:   3'- gUCGgCaa-CGUCUCCGUGGUu-------------GCCAG- -5'
14286 5' -56.6 NC_003521.1 + 197836 0.81 0.250837
Target:  5'- aCGGCCGUcUGCAGgucgucgguGGGCGCCGGCgGGUCg -3'
miRNA:   3'- -GUCGGCA-ACGUC---------UCCGUGGUUG-CCAG- -5'
14286 5' -56.6 NC_003521.1 + 97110 0.68 0.870159
Target:  5'- uCGGCCagcgUGCAGaAGGCG-CGGCGGUa -3'
miRNA:   3'- -GUCGGca--ACGUC-UCCGUgGUUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 129269 0.83 0.183625
Target:  5'- uCAGCCGcaccucgagGUAGAGGCGCCGGCGGUa -3'
miRNA:   3'- -GUCGGCaa-------CGUCUCCGUGGUUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 98454 0.66 0.931338
Target:  5'- gGGCuaCGUUGgaGGAGGCGgCGGCGGcCg -3'
miRNA:   3'- gUCG--GCAACg-UCUCCGUgGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 110839 0.74 0.535982
Target:  5'- -cGCCGgcGCAGcGGCAgCGACGGUg -3'
miRNA:   3'- guCGGCaaCGUCuCCGUgGUUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 109348 0.66 0.930838
Target:  5'- gCAGCCGgcGCAgGAGGCcgacgagGCCGagagcGCGGcCu -3'
miRNA:   3'- -GUCGGCaaCGU-CUCCG-------UGGU-----UGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 166911 0.66 0.920345
Target:  5'- gGGCaCGggGCAGAGGUagacgggGCCcACGGcCu -3'
miRNA:   3'- gUCG-GCaaCGUCUCCG-------UGGuUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 178007 0.67 0.909535
Target:  5'- gGGCgGguagGaCGGAGGCGgCC-ACGGUCg -3'
miRNA:   3'- gUCGgCaa--C-GUCUCCGU-GGuUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 136424 0.67 0.905952
Target:  5'- aCAGCCGUccgcgagguagcccuUGaggaAGAGGCACUugcucuggcacuGGCGGUa -3'
miRNA:   3'- -GUCGGCA---------------ACg---UCUCCGUGG------------UUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 13406 0.67 0.890163
Target:  5'- -cGUCGUUGUGGGGGUGUCAgaugggaACGGUCg -3'
miRNA:   3'- guCGGCAACGUCUCCGUGGU-------UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 219707 0.68 0.877256
Target:  5'- gGGUCGUcggcaGCGGAGGCA---ACGGUCu -3'
miRNA:   3'- gUCGGCAa----CGUCUCCGUgguUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 39801 0.68 0.855359
Target:  5'- aGGCUcg-GCGG-GGCGCCGgGCGGUCc -3'
miRNA:   3'- gUCGGcaaCGUCuCCGUGGU-UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 108221 0.69 0.83979
Target:  5'- aAGCCGUUGCGGA--CGCCGACGc-- -3'
miRNA:   3'- gUCGGCAACGUCUccGUGGUUGCcag -5'
14286 5' -56.6 NC_003521.1 + 169963 0.69 0.831732
Target:  5'- -cGUCGUUGCucuccuccugGGAGGCGgCGGCGGg- -3'
miRNA:   3'- guCGGCAACG----------UCUCCGUgGUUGCCag -5'
14286 5' -56.6 NC_003521.1 + 116682 0.69 0.815104
Target:  5'- gCAGCgGcgGCGGAGGCAgCGgcGCGGg- -3'
miRNA:   3'- -GUCGgCaaCGUCUCCGUgGU--UGCCag -5'
14286 5' -56.6 NC_003521.1 + 163365 0.71 0.694497
Target:  5'- gCGGCgGcgGCAGugucacGGGCACCAACGG-Cg -3'
miRNA:   3'- -GUCGgCaaCGUC------UCCGUGGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 118747 0.72 0.664791
Target:  5'- aAGUCGcUGCAGAcGGCAUCGACgugaaGGUCa -3'
miRNA:   3'- gUCGGCaACGUCU-CCGUGGUUG-----CCAG- -5'
14286 5' -56.6 NC_003521.1 + 172391 0.73 0.59495
Target:  5'- -cGCgGUUG-AGGGGCGCCGGCGGa- -3'
miRNA:   3'- guCGgCAACgUCUCCGUGGUUGCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.