miRNA display CGI


Results 61 - 80 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 5' -56.6 NC_003521.1 + 196971 0.66 0.931338
Target:  5'- gAGCCG--GCcGGGGCGCCuguGACGGg- -3'
miRNA:   3'- gUCGGCaaCGuCUCCGUGG---UUGCCag -5'
14286 5' -56.6 NC_003521.1 + 161180 0.74 0.539858
Target:  5'- -cGCCGcUGCAgcagcagacgacgccGAGGCGCC-GCGGUCg -3'
miRNA:   3'- guCGGCaACGU---------------CUCCGUGGuUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 148559 0.73 0.624865
Target:  5'- cCGGCCGguagcgGCAGcGGCACCcaggGAgGGUCg -3'
miRNA:   3'- -GUCGGCaa----CGUCuCCGUGG----UUgCCAG- -5'
14286 5' -56.6 NC_003521.1 + 172302 0.72 0.674729
Target:  5'- -cGCCGUccggUGuCGGuGGCGCCAGgcCGGUCg -3'
miRNA:   3'- guCGGCA----AC-GUCuCCGUGGUU--GCCAG- -5'
14286 5' -56.6 NC_003521.1 + 38728 0.7 0.770902
Target:  5'- cCAGCUGcgGUauuAGAGGCGCCGGgccccguccCGGUCu -3'
miRNA:   3'- -GUCGGCaaCG---UCUCCGUGGUU---------GCCAG- -5'
14286 5' -56.6 NC_003521.1 + 129667 0.69 0.823501
Target:  5'- gCGGCCGcgcuaUGCGGAccgucccguGGCcCCAGCGGUa -3'
miRNA:   3'- -GUCGGCa----ACGUCU---------CCGuGGUUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 109348 0.66 0.930838
Target:  5'- gCAGCCGgcGCAgGAGGCcgacgagGCCGagagcGCGGcCu -3'
miRNA:   3'- -GUCGGCaaCGU-CUCCG-------UGGU-----UGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 179461 0.67 0.915327
Target:  5'- gAGCUGUUGCAGgaAGcGgGCCGugGG-Ca -3'
miRNA:   3'- gUCGGCAACGUC--UC-CgUGGUugCCaG- -5'
14286 5' -56.6 NC_003521.1 + 7739 0.67 0.903519
Target:  5'- gCGGCgCGagcgGCGGAGGCGgCGGCaGUCc -3'
miRNA:   3'- -GUCG-GCaa--CGUCUCCGUgGUUGcCAG- -5'
14286 5' -56.6 NC_003521.1 + 222042 0.67 0.909535
Target:  5'- gCAGUaucgGCgGGGGGCACCAGCcGUCg -3'
miRNA:   3'- -GUCGgcaaCG-UCUCCGUGGUUGcCAG- -5'
14286 5' -56.6 NC_003521.1 + 166639 0.68 0.85536
Target:  5'- gCAGCUGUUGCu--GGUGCCGuagcgACGGUa -3'
miRNA:   3'- -GUCGGCAACGucuCCGUGGU-----UGCCAg -5'
14286 5' -56.6 NC_003521.1 + 240504 0.67 0.915327
Target:  5'- uGGCCGuUUGCAcgcuGGGGaCGCCAGacCGGUg -3'
miRNA:   3'- gUCGGC-AACGU----CUCC-GUGGUU--GCCAg -5'
14286 5' -56.6 NC_003521.1 + 58770 0.66 0.919246
Target:  5'- cCAGCCacUGCAGGGcggcgcGCGCCGgcgacgacgcauagACGGUCu -3'
miRNA:   3'- -GUCGGcaACGUCUC------CGUGGU--------------UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 80070 0.66 0.919246
Target:  5'- --aCCGUUGUugucucugcucaucGGGGGUGCCGACGG-Cg -3'
miRNA:   3'- gucGGCAACG--------------UCUCCGUGGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 125100 0.66 0.920891
Target:  5'- gCAGgCGcUGCGGgauGGGCACC-ACGGcCg -3'
miRNA:   3'- -GUCgGCaACGUC---UCCGUGGuUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 129365 0.68 0.85536
Target:  5'- aGGCgGUUGCAGaAGGUGCCGaagAUGGcCu -3'
miRNA:   3'- gUCGgCAACGUC-UCCGUGGU---UGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 54290 0.69 0.838992
Target:  5'- aGGCCGUUGCGGcuGGCcacguagAgCAGCGcGUCg -3'
miRNA:   3'- gUCGGCAACGUCu-CCG-------UgGUUGC-CAG- -5'
14286 5' -56.6 NC_003521.1 + 145599 0.66 0.920891
Target:  5'- gCGGCCGUggccucgcugcUGCAGucGCACC--CGGUg -3'
miRNA:   3'- -GUCGGCA-----------ACGUCucCGUGGuuGCCAg -5'
14286 5' -56.6 NC_003521.1 + 188040 0.66 0.920345
Target:  5'- uCAGCCGgUGCAGcGGGUugucgauGCC-GCGGUa -3'
miRNA:   3'- -GUCGGCaACGUC-UCCG-------UGGuUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 125788 0.72 0.674729
Target:  5'- gCAGCCGgccUGC-GAGGC-CCAGgGGUUg -3'
miRNA:   3'- -GUCGGCa--ACGuCUCCGuGGUUgCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.