miRNA display CGI


Results 81 - 100 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14286 5' -56.6 NC_003521.1 + 125788 0.72 0.674729
Target:  5'- gCAGCCGgccUGC-GAGGC-CCAGgGGUUg -3'
miRNA:   3'- -GUCGGCa--ACGuCUCCGuGGUUgCCAG- -5'
14286 5' -56.6 NC_003521.1 + 88525 0.72 0.654828
Target:  5'- gCAGCCG-UGCAGGcGCACCGaaACGGcCu -3'
miRNA:   3'- -GUCGGCaACGUCUcCGUGGU--UGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 187576 0.72 0.634857
Target:  5'- -cGCCaaGUccGCGGGGGCuucGCCGGCGGUCg -3'
miRNA:   3'- guCGG--CAa-CGUCUCCG---UGGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 76699 0.74 0.555453
Target:  5'- gGGuCCGUguaGCGGuGGCACCGGCGG-Cg -3'
miRNA:   3'- gUC-GGCAa--CGUCuCCGUGGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 159826 0.74 0.545689
Target:  5'- cCGGCCGUgaggcgcugcGCGGAGGCGCgagcgUAACGGUUg -3'
miRNA:   3'- -GUCGGCAa---------CGUCUCCGUG-----GUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 30897 0.67 0.89728
Target:  5'- gGGCCGagcugaacUGCGGcAGGCGagAGCGGUCc -3'
miRNA:   3'- gUCGGCa-------ACGUC-UCCGUggUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 73132 0.67 0.89728
Target:  5'- -uGCUGcacgGCGGGGGCAgCGGCGG-Cg -3'
miRNA:   3'- guCGGCaa--CGUCUCCGUgGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 125100 0.66 0.920891
Target:  5'- gCAGgCGcUGCGGgauGGGCACC-ACGGcCg -3'
miRNA:   3'- -GUCgGCaACGUC---UCCGUGGuUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 75533 0.66 0.920891
Target:  5'- gAGCUGUgucaguuCAGcGGCGCCGGCGG-Cg -3'
miRNA:   3'- gUCGGCAac-----GUCuCCGUGGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 188040 0.66 0.920345
Target:  5'- uCAGCCGgUGCAGcGGGUugucgauGCC-GCGGUa -3'
miRNA:   3'- -GUCGGCaACGUC-UCCG-------UGGuUGCCAg -5'
14286 5' -56.6 NC_003521.1 + 80070 0.66 0.919246
Target:  5'- --aCCGUUGUugucucugcucaucGGGGGUGCCGACGG-Cg -3'
miRNA:   3'- gucGGCAACG--------------UCUCCGUGGUUGCCaG- -5'
14286 5' -56.6 NC_003521.1 + 58770 0.66 0.919246
Target:  5'- cCAGCCacUGCAGGGcggcgcGCGCCGgcgacgacgcauagACGGUCu -3'
miRNA:   3'- -GUCGGcaACGUCUC------CGUGGU--------------UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 240504 0.67 0.915327
Target:  5'- uGGCCGuUUGCAcgcuGGGGaCGCCAGacCGGUg -3'
miRNA:   3'- gUCGGC-AACGU----CUCC-GUGGUU--GCCAg -5'
14286 5' -56.6 NC_003521.1 + 186597 0.67 0.913613
Target:  5'- gCAGCCGcccgGCAGucGGUacugccggacaccgGCCAgcaGCGGUCg -3'
miRNA:   3'- -GUCGGCaa--CGUCu-CCG--------------UGGU---UGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 127411 0.67 0.909535
Target:  5'- uGGUCG-UGCAGcgcguucacguAGGcCGCCAGCGGcUCg -3'
miRNA:   3'- gUCGGCaACGUC-----------UCC-GUGGUUGCC-AG- -5'
14286 5' -56.6 NC_003521.1 + 224012 0.67 0.909535
Target:  5'- gCGGCa---GCGGcGGGC-CCGGCGGUCg -3'
miRNA:   3'- -GUCGgcaaCGUC-UCCGuGGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 222572 0.67 0.903519
Target:  5'- cCAcUCGcaGCAGAGGCGCUGGCGGa- -3'
miRNA:   3'- -GUcGGCaaCGUCUCCGUGGUUGCCag -5'
14286 5' -56.6 NC_003521.1 + 145897 0.67 0.903519
Target:  5'- -cGCCGgcgGCGGGaGCAgCGGCGGUUc -3'
miRNA:   3'- guCGGCaa-CGUCUcCGUgGUUGCCAG- -5'
14286 5' -56.6 NC_003521.1 + 116887 0.67 0.903519
Target:  5'- gCGGCUGcgGCGGc-GCGCCGGCGGg- -3'
miRNA:   3'- -GUCGGCaaCGUCucCGUGGUUGCCag -5'
14286 5' -56.6 NC_003521.1 + 71286 0.67 0.903519
Target:  5'- gGGCCGcgGCAcgggccccuGGGGCACCAGCa--- -3'
miRNA:   3'- gUCGGCaaCGU---------CUCCGUGGUUGccag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.