miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14288 3' -54.3 NC_003521.1 + 91368 0.69 0.940116
Target:  5'- -aGAGCGCGUcGUAGAGGUGgguccaggcCGACUu -3'
miRNA:   3'- agCUUGUGCGcCAUCUCCAC---------GCUGAc -5'
14288 3' -54.3 NC_003521.1 + 101402 0.69 0.914358
Target:  5'- aCGGcCACGCaGG-AGAGcccGUGCGGCUGg -3'
miRNA:   3'- aGCUuGUGCG-CCaUCUC---CACGCUGAC- -5'
14288 3' -54.3 NC_003521.1 + 102758 0.76 0.592997
Target:  5'- -gGuGCACGCGGUAGAGcGgcaGCGGCUGc -3'
miRNA:   3'- agCuUGUGCGCCAUCUC-Ca--CGCUGAC- -5'
14288 3' -54.3 NC_003521.1 + 103069 0.73 0.769216
Target:  5'- gCGggUGCGCGGgcGAGGgcUGCuGCUGg -3'
miRNA:   3'- aGCuuGUGCGCCauCUCC--ACGcUGAC- -5'
14288 3' -54.3 NC_003521.1 + 108289 0.67 0.975145
Target:  5'- cCGAGgGCgGUGGUGGcGGUGaCGACg- -3'
miRNA:   3'- aGCUUgUG-CGCCAUCuCCAC-GCUGac -5'
14288 3' -54.3 NC_003521.1 + 111062 0.78 0.514828
Target:  5'- -gGGACagGCGCGGUAGAGG-GCGGCg- -3'
miRNA:   3'- agCUUG--UGCGCCAUCUCCaCGCUGac -5'
14288 3' -54.3 NC_003521.1 + 112069 0.73 0.750598
Target:  5'- -aGGACGcCGCGGUGGggaucAGGgGCGGCUGg -3'
miRNA:   3'- agCUUGU-GCGCCAUC-----UCCaCGCUGAC- -5'
14288 3' -54.3 NC_003521.1 + 113391 0.67 0.969779
Target:  5'- gCGGACGcCGCGGgcG-GGUGCGcaACUu -3'
miRNA:   3'- aGCUUGU-GCGCCauCuCCACGC--UGAc -5'
14288 3' -54.3 NC_003521.1 + 114006 0.77 0.563314
Target:  5'- gCGAGCACGCgaaGGUgcuGGAGGUGCGcgcggaGCUGg -3'
miRNA:   3'- aGCUUGUGCG---CCA---UCUCCACGC------UGAC- -5'
14288 3' -54.3 NC_003521.1 + 114619 0.7 0.908524
Target:  5'- gUCGAACACGUGcGUGGccuacgugaaccGGGUGCGcACc- -3'
miRNA:   3'- -AGCUUGUGCGC-CAUC------------UCCACGC-UGac -5'
14288 3' -54.3 NC_003521.1 + 114725 0.67 0.975145
Target:  5'- aUCGAccgcuggauccgGCACGCcGUGGGGGUggcGCGGCc- -3'
miRNA:   3'- -AGCU------------UGUGCGcCAUCUCCA---CGCUGac -5'
14288 3' -54.3 NC_003521.1 + 115460 0.66 0.981842
Target:  5'- gCGGACG-GUGGUAGuGGUGCaggGACa- -3'
miRNA:   3'- aGCUUGUgCGCCAUCuCCACG---CUGac -5'
14288 3' -54.3 NC_003521.1 + 115914 0.68 0.944586
Target:  5'- gUC-AGCuCGCGGUAGAGGUGaGGCc- -3'
miRNA:   3'- -AGcUUGuGCGCCAUCUCCACgCUGac -5'
14288 3' -54.3 NC_003521.1 + 117393 0.68 0.959902
Target:  5'- gCGGcACGCGCugugcuggcaccgGGUGGAGG-GCGGCa- -3'
miRNA:   3'- aGCU-UGUGCG-------------CCAUCUCCaCGCUGac -5'
14288 3' -54.3 NC_003521.1 + 117432 0.69 0.934938
Target:  5'- cUCGggUccGCGCGGccuGAcuagccgccugucGGUGCGGCUGu -3'
miRNA:   3'- -AGCuuG--UGCGCCau-CU-------------CCACGCUGAC- -5'
14288 3' -54.3 NC_003521.1 + 120327 0.66 0.985485
Target:  5'- aUCGAgACAUGCGGUGGccGcUGCuGCUGc -3'
miRNA:   3'- -AGCU-UGUGCGCCAUCucC-ACGcUGAC- -5'
14288 3' -54.3 NC_003521.1 + 120893 0.68 0.944586
Target:  5'- cCGuGCAgGUGGUcGGGG-GCGGCUGc -3'
miRNA:   3'- aGCuUGUgCGCCAuCUCCaCGCUGAC- -5'
14288 3' -54.3 NC_003521.1 + 121150 0.66 0.985485
Target:  5'- aUGAGCAuguCGCGGUcgaagaagaAGAGG-GCGGCc- -3'
miRNA:   3'- aGCUUGU---GCGCCA---------UCUCCaCGCUGac -5'
14288 3' -54.3 NC_003521.1 + 123446 0.67 0.977551
Target:  5'- aCGGAgGCGCcGUAGcggggaccgcGGGUugGCGACUGg -3'
miRNA:   3'- aGCUUgUGCGcCAUC----------UCCA--CGCUGAC- -5'
14288 3' -54.3 NC_003521.1 + 128036 0.68 0.956661
Target:  5'- cUCGcgccGCACGCGGUAGAaGUGgcCGACg- -3'
miRNA:   3'- -AGCu---UGUGCGCCAUCUcCAC--GCUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.